relecov-tools v1.1.0

[v1.1.0] - 2024-09-16

Credits

Code contributions to the hotfix:

• Pablo Mata
• Sara Monzón

Modules

• New logs-to-excel function to create an excel file given a list of log-summary.json files #300

Added enhancements

• Included a way to extract pango-designation version in read-bioinfo-metadata #299
• Now log_summary.py also creates an excel file with the process logs #300
• Read-bioinfo-metadata splits files and data by batch of samples #306
• Included a sleep time in test_sftp-handle to avoid concurrency check failure #308

Fixes

• Fixes in launch_pipeline including creation of samples_id.txt and joined validated json #303
• Fixed failing module_tests.yml workflow due to deprecated upload-artifact version #308

Changed

• Changed pypi_publish action to publish on every release, no need to push tags #308

Removed

• Removed only_samples argument in log_summary.py as it was not used in any module. #300

relecov-tools v1.0.0

This release is the first fully functional version of the relecov-tools package. This means that the workflow for data management can be executed end-to-end with no restrictions from now on.

First dev version

Full phage+ schema, before reducing fields.