Updates staging-dynamic with master #212
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#169) * move cf handlers out of init * add imports
* replaces linked refs with manual refs for now due to only highly complex and error prone alternatives available for automation * adds sphinx bibtex to setup for tests
* start * update code * refs merge * fix json * grammatical fixes, re-applying these changes as the original branch got conflated with something in stash * add plot description * adds link to referenced pyro tutorial --------- Co-authored-by: Andy Zane <[email protected]>
* notebook and fixes * notebook works * temp commit that gives mae=.02 when removing no grad line when generating data * seems to work, verbose loss output * removed loss outputs and fixed some small typos --------- Co-authored-by: Raj Agrawal <[email protected]>
* initial pass that makes small modifications to CONTRIBUTING.md file in pyro * calls lint script instead * fixed to call clean.sh script * replaced with clean script --------- Co-authored-by: Raj Agrawal <[email protected]>
Co-authored-by: Raj Agrawal <[email protected]>
* added docstring for intervene following issue #113 * removed extra spacing * adds docstring for DoMessenger * removes generic type hint on _intervene_atom so that intervene signatures properly show up in docs. --------- Co-authored-by: Raj Agrawal <[email protected]> Co-authored-by: Andy Zane <[email protected]>
* add a draft logo to replace placeholder * add svg
* notebook and fixes * notebook works * update notebook * working * revert cevae to master in this branch * pull in changes * fix typo * adds (live, see comment) link to backdoor example, replacing inline TODO * properly uses relative link for backdoor notebook. --------- Co-authored-by: Andy Zane <[email protected]>
* copied and pasted index.rst and auto converted to markdown * reformatted, added table to tutorials and examples, still need to add cites * fixed small spacing typos * added status badge * points readme documentation links to live docs. * making the readme an rst that matches landing page * converted tutorial links * converted back to table format for links * table still messed up * gave up on tables, now a bulleted list for examples * added documentation section * small changes * added back missing bullets * fixed to queried_model * review with Sam for cleaning up readme over a call * fixed typo * small edit --------- Co-authored-by: Raj Agrawal <[email protected]> Co-authored-by: Andy Zane <[email protected]>
* fixed outline rendering * fixes outline links in mediation notebook. * fixes outline and links for backdoor notebook. * fixes outline links in cevae notebook. * fixes slc notebook outline links. * adds outline back into deep scm notebook. * address remaining reference issues, building now with now warnings --------- Co-authored-by: Andy Zane <[email protected]>
* first pass at stitching design notes together into cohesive contributor tutorial. * cleans up local bibs, adds omega citation. * updates mention of omega and predicate conditioning * re-integrates the original point being made at the top of observations.rst * renames things to be less redundant
* code and tests * scripts * remove * code misses * docs * Causal Pyro * causal pyro * lint
* Update setup.py args * classifier
* Separate observe and condition * Split up files and create observational handlers folder * imports * lint * rename test * add test about commutativity of do and condition * doc * union * fix particle test case * fix bug * chirho
* Separate observe and condition * Split up files and create observational handlers folder * imports * lint * rename test * add test about commutativity of do and condition * doc * union * Refactor counterfactuals to use observe * appease mypy * Vindex fixes particle errors * update backdoor * update slc * fix particle test case * add cf commutativity test * fix bug * revert slc handler order * add predictive smoke test * nit * elbo * reorder test * Add a stronger infer_discrete test * move notebooks to separate branch * test * chirho * merge fail * Update and re-run example notebooks with new condition (#178) * Update and re-run backdoor and SLC notebooks * deepscm * cevae * import * mediation * merge * update notebooks * merge * merge 2 * toc * populate autodoc * tweak * Restores (via cherry-pick) Notebook Link and Formatting Changes (#205) * fixed outline rendering * fixes outline links in mediation notebook. * fixes outline and links for backdoor notebook. * fixes outline links in cevae notebook. * fixes slc notebook outline links. * adds outline back into deep scm notebook. * address remaining reference issues, building now with now warnings --------- Co-authored-by: Sam Witty <[email protected]> --------- Co-authored-by: Andy Zane <[email protected]> Co-authored-by: Sam Witty <[email protected]>
* fixed symbolic link in tutorial * Revert changes to figure paths * Reverted accidental newline from previous commit
* Fix image duplication * fix the one other warning in the docs build
* Bump prerelease version to 0.1.0-alpha * Comply with pep440
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Superseded by #213 |
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Addressed by #213 |
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