Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Revise basic SIR tutorial #377

Merged
merged 46 commits into from
Dec 7, 2023
Merged

Revise basic SIR tutorial #377

merged 46 commits into from
Dec 7, 2023

Commits on Nov 13, 2023

  1. changes dynamical systems intro to be more short-term focussed

    @SamWitty
    SamWitty committed Nov 13, 2023
    Configuration menu
    Copy the full SHA
    5bb60cc View commit details
    Browse the repository at this point in the history

  2. suppress warnings

    @SamWitty
    SamWitty committed Nov 13, 2023
    Configuration menu
    Copy the full SHA
    d164bb8 View commit details
    Browse the repository at this point in the history

  3. remove counterfactual demo

    @SamWitty
    SamWitty committed Nov 13, 2023
    Configuration menu
    Copy the full SHA
    55f35ff View commit details
    Browse the repository at this point in the history

Commits on Nov 28, 2023

  1. Merge branch 'master' of https://github.com/BasisResearch/causal_pyro … 

    …into sw-revise-SIR-tutorial
    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    5690500 View commit details
    Browse the repository at this point in the history

  2. remove unused imports and reorder imports

    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    7d21af6 View commit details
    Browse the repository at this point in the history

  3. add failing LogTrajectory test

    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    f5b6d24 View commit details
    Browse the repository at this point in the history

  4. revise tests to exercise start and end time collisions

    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    9fd7c52 View commit details
    Browse the repository at this point in the history

  5. removed unnecessary imports from test

    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    6b3f985 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'master' of https://github.com/BasisResearch/causal_pyro … 

    …into sw-time-collision
    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    1cedd1e View commit details
    Browse the repository at this point in the history

  7. Merge branch 'master' of https://github.com/BasisResearch/causal_pyro … 

    …into sw-time-collision
    @SamWitty
    SamWitty committed Nov 28, 2023
    Configuration menu
    Copy the full SHA
    b479d32 View commit details
    Browse the repository at this point in the history

Commits on Nov 30, 2023

  1. much simpler implementation

    @SamWitty
    SamWitty committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    dc69b91 View commit details
    Browse the repository at this point in the history

  2. lint and comment

    @SamWitty
    SamWitty committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    1abc181 View commit details
    Browse the repository at this point in the history

  3. added some functional indirection to appease linter

    @SamWitty
    SamWitty committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    ae4d013 View commit details
    Browse the repository at this point in the history

  4. lint

    @SamWitty
    SamWitty committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    2693668 View commit details
    Browse the repository at this point in the history

  5. type refinement

    @SamWitty
    SamWitty committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    9c2e936 View commit details
    Browse the repository at this point in the history

  6. nit about arg unpacking order

    @SamWitty
    SamWitty authored Nov 30, 2023
    Configuration menu
    Copy the full SHA
    f513a0e View commit details
    Browse the repository at this point in the history

Commits on Dec 4, 2023

  1. Merge branch 'master' of https://github.com/BasisResearch/causal_pyro … 

    …into sw-time-collision
    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    053d047 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'sw-time-collision' of https://github.com/BasisResearch/… 

    …causal_pyro into sw-time-collision
    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    fe666b9 View commit details
    Browse the repository at this point in the history

  3. added multiple simulate handling

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    ff0a626 View commit details
    Browse the repository at this point in the history

  4. remove commented stop

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    1b84677 View commit details
    Browse the repository at this point in the history

  5. lint

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    6b20372 View commit details
    Browse the repository at this point in the history

  6. made BatchObservation handler use a continuation to guarantee it's ap… 

    …plied after all solves
    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    f2132ce View commit details
    Browse the repository at this point in the history

  7. lint

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    ce605a0 View commit details
    Browse the repository at this point in the history

  8. Merge branch 'master' into sw-revise-SIR-tutorial

    @SamWitty
    SamWitty authored Dec 4, 2023
    Configuration menu
    Copy the full SHA
    14ad3dc View commit details
    Browse the repository at this point in the history

  9. Merge branch 'sw-time-collision' of https://github.com/BasisResearch/… 

    …causal_pyro into sw-revise-SIR-tutorial
    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    e81ee0b View commit details
    Browse the repository at this point in the history

  10. add dynamical intro notebook to CI build

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    90213ee View commit details
    Browse the repository at this point in the history

  11. add CI test parameters

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    12ab235 View commit details
    Browse the repository at this point in the history

  12. add a bunch of textual content

    @SamWitty
    SamWitty committed Dec 4, 2023
    Configuration menu
    Copy the full SHA
    e14dbb6 View commit details
    Browse the repository at this point in the history

Commits on Dec 5, 2023

  1. Added description of example

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    5773fd3 View commit details
    Browse the repository at this point in the history

  2. fixed bug in inference and added some plot changes

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    cd5ed6d View commit details
    Browse the repository at this point in the history

  3. fixed bug in inference and added some plot changes

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    e89ea65 View commit details
    Browse the repository at this point in the history

  4. updated plots

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    ef25bf4 View commit details
    Browse the repository at this point in the history

  5. updated plots

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    ddbb126 View commit details
    Browse the repository at this point in the history

  6. more plot updates

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    3802246 View commit details
    Browse the repository at this point in the history

  7. more plot updates

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    e0077db View commit details
    Browse the repository at this point in the history

  8. finished first pass of text, will edit tomorrow morning

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    da80e59 View commit details
    Browse the repository at this point in the history

  9. reran and minor edits

    @SamWitty
    SamWitty committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    78f1d9f View commit details
    Browse the repository at this point in the history

Commits on Dec 6, 2023

  1. text edits

    @SamWitty
    SamWitty committed Dec 6, 2023
    Configuration menu
    Copy the full SHA
    54cbfb2 View commit details
    Browse the repository at this point in the history

  2. add glossary

    @SamWitty
    SamWitty committed Dec 6, 2023
    Configuration menu
    Copy the full SHA
    c732ae6 View commit details
    Browse the repository at this point in the history

Commits on Dec 7, 2023

  1. Merge branch 'master' into sw-revise-SIR-tutorial

    @SamWitty
    SamWitty authored Dec 7, 2023
    Configuration menu
    Copy the full SHA
    440d227 View commit details
    Browse the repository at this point in the history

  2. Update solver.py 

    missed merge conflict
    @SamWitty
    SamWitty authored Dec 7, 2023
    Configuration menu
    Copy the full SHA
    3b6a4f6 View commit details
    Browse the repository at this point in the history

  3. previous commit fix

    @SamWitty
    SamWitty authored Dec 7, 2023
    Configuration menu
    Copy the full SHA
    c0144a8 View commit details
    Browse the repository at this point in the history

  4. add dynamical systems dependencies to CI workflow

    @SamWitty
    SamWitty committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    cf913c5 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'sw-revise-SIR-tutorial' of https://github.com/BasisRese… 

    …arch/causal_pyro into sw-revise-SIR-tutorial
    @SamWitty
    SamWitty committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    0394737 View commit details
    Browse the repository at this point in the history

  6. addressing comments

    @SamWitty
    SamWitty committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    9ede4ce View commit details
    Browse the repository at this point in the history

  7. reran notebook

    @SamWitty
    SamWitty committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    d5ada3a View commit details
    Browse the repository at this point in the history