MDAnalysis with Dask

Code to benchmark parallelization of MDAnalysis with Dask [1, 2, 3]

References

1. M. Khoshlessan and O. Beckstein. Parallel analysis in the MDAnalysis library: Benchmark of trajectory file formats. Technical report, Arizona State University, Tempe, AZ, 2017. figshare. doi: 10.6084/m9.figshare.4695742
2. M. Khoshlessan, I. Paraskevakos, S. Jha, and O. Beckstein. Parallel analysis in MDAnalysis using the Dask parallel computing library. In S. Benthall and S. Rostrup, editors, Proceedings of the 16th Python in Science Conference, Austin, TX, 2017. SciPy. PR scipy-conference/scipy_proceedings#290
3. I. Paraskevakos et al, Parallel Analysis of Molecular Dynamics Trajectory. In preparation.