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BiologyTools/readme.md

Welcome to the BiologyTools github page.

Download the version of Bio library/program that fits your needs.

  • BioGTK is a cross-platform version of Bio library providing a ImageView widget for whole slide and image stacks. Also includes Segment-Anything based Segmentation of objects in images.
  • BioCore is a Winforms based windows only library with ImageView control for pyramidal, wholeslide images as well as stacks.
  • BioLib is the cross-platform version of the library without a GUI.
  • BioImager is a microscopy imaging application & library which supports various microscopes by using imported libraries & GUI automation. Supported libraries include Zeiss® & all microscopes supported by MicroManager 2.0, or python-microscope

BioGTK & BioCore, and BioImager come as a library and a program.

All programs & libraries share the ability to save images in various formats supported by the Bioformats library as well as ImageJ tiff format with additional metadata which can be opened using any Bio library based program. Bio includes ability to easily create tool scripts, plugins, and functions, which includes ImageJ macro functions. Bio currently integrates with ImageJ/Fiji through the macro language as well importing & exporting ImageJ ROIs. Check out library usage. Scripting with ImageJ & C# can be a powerful tool especially when image acquistion can be controlled programmatically as well. This is what BioImager specializes in with the Microscope class that can control Zeiss, & Prior as well as any microscope supported by Micromanager 2.0 or Python-Microscope.

Check out the @BiologyTools YouTube channel for tutorials.

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  1. BioImager BioImager Public

    A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, r…

    C# 11 5

  2. BioGTK BioGTK Public

    A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, …

    C# 8 2

  3. ImageJ.NET ImageJ.NET Public

    ImageJ Control using C# and IKVM.

    4 3

  4. Micro-Manager.NET Micro-Manager.NET Public

    Controlling Micro-Manager 2.0.3 with IKVM & C#

    1

  5. BioCore BioCore Public

    Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

    C# 2 1

  6. BioFormatsNET6 BioFormatsNET6 Public

    Bioformats java library converted to .NET6 with IKVM

    2