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@BiomedSciAI

BiomedSciAI

BiomedSciAI

🙋‍♀️ What is BiomedSciAI?

Our mission is to accelerate scientific discovery in Biomedical Sciences through a variety of tools that can help scientists do their research quicker and more effectively.

Whether you use population-scale data like EHRs, body-part data like medical imaging, subcellullar-scale data like spatially resolved omics, or a combination of various modalities, we host tools that will help you make the most out of it.

🌈 How can I get involved?

If you want to contribute and get involved check out the guidelines of the repository of your interest and our code of conduct.

👩‍💻 How can I use it?

We have plenty of stuff you can do with BiomedSciAI. A good starting point is to check out the pinned repositories. You can find all implementation details and some examples in the docs.

Try out the examples in the repositories that we prepared for various applications.

Pinned Loading

  1. histocartography histocartography Public

    A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

    Python 229 53

  2. DPM360 DPM360 Public

    Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

    JavaScript 19 4

  3. fuse-med-ml fuse-med-ml Public

    A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

    Python 129 35

  4. causallib causallib Public

    A Python package for modular causal inference analysis and model evaluations

    Python 690 95

Repositories

Showing 10 of 10 repositories
  • BiomedSciAI/gene-benchmark’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 0 0 1 Updated Jun 30, 2024
  • fuse-med-ml Public

    A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

    BiomedSciAI/fuse-med-ml’s past year of commit activity
    Python 129 Apache-2.0 35 24 (5 issues need help) 10 Updated Jun 30, 2024
  • fuse-drug Public

    FuseMedML based molecular biochemistry library for drug discovery/repurposing

    BiomedSciAI/fuse-drug’s past year of commit activity
    Python 11 Apache-2.0 5 9 2 Updated Jun 18, 2024
  • causallib Public

    A Python package for modular causal inference analysis and model evaluations

    BiomedSciAI/causallib’s past year of commit activity
    Python 690 Apache-2.0 95 4 2 Updated Jun 15, 2024
  • histocartography Public

    A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

    BiomedSciAI/histocartography’s past year of commit activity
    Python 229 AGPL-3.0 53 17 5 Updated Dec 23, 2023
  • Geno4SD Public

    An python omics data toolkit for the analysis across biological scales

    BiomedSciAI/Geno4SD’s past year of commit activity
    Jupyter Notebook 8 Apache-2.0 1 0 0 Updated Dec 5, 2023
  • r-BRICS Public

    Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks ring structures and carbon chains

    BiomedSciAI/r-BRICS’s past year of commit activity
    Python 4 1 0 0 Updated Jul 24, 2023
  • BiomedSciAI/multimodal-models-toolkit’s past year of commit activity
    Jupyter Notebook 6 0 1 0 Updated Jun 23, 2023
  • DPM360 Public

    Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

    BiomedSciAI/DPM360’s past year of commit activity
    JavaScript 19 Apache-2.0 4 6 0 Updated May 9, 2023
  • .github Public
    BiomedSciAI/.github’s past year of commit activity
    0 0 1 0 Updated Mar 22, 2023

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