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This repository provides code to generate a transcriptomic atlas and its mapping to TME types.

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BlueBrain/Molsys-transcriptomic-atlas

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Convert t-types to me-types

Download t-types.nrrd (if necessary)

sh dl_t_type_nrrd.sh

Run on BB5

sbatch process_t_types_job.sh

it will call the convert_t_type_nrrds_to_me_type_nrrds.py python script

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

Copyright (c) 2024 Blue Brain Project/EPFL

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This repository provides code to generate a transcriptomic atlas and its mapping to TME types.

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