Code

Adding Databases object#339

Code

Open

crisely09 wants to merge 34 commits intomasterBlueBrain/nexus-forge:masterfrom dev-resourcesBlueBrain/nexus-forge:dev-resourcesCopy head branch name to clipboard

+3,773-31

Commits

Commits on Sep 18, 2023

• Added DatabaseSources to forge.

  crisely09

  committed
  a3e35d8

  Copy full SHA for a3e35d8

• Improved DatabaseSource class. Made possible to load mappings from local directory.

  crisely09

  committed
  afd5ba5

  Copy full SHA for afd5ba5

• Added option to retrieve mappings from bd_sources also from the forge.

  crisely09

  committed
  f03f941

  Copy full SHA for f03f941

• Added option to display types of mappings, a model and a store to each DatabaseSource.

  crisely09

  committed
  9ace785

  Copy full SHA for 9ace785

• Updated notebook

  crisely09

  committed
  1da8883

  Copy full SHA for 1da8883

• Did a little clean-up of the notebook

  crisely09

  committed
  9b3c88a

  Copy full SHA for 9b3c88a

• Change SPARQLStore to Specilized UniProtStore. Added Service and spaql query. Ongoing work.

  crisely09

  committed
  a3e4d74

  Copy full SHA for a3e4d74

• Added SPARQLWrapper to dependency list.

  crisely09

  committed
  3e002cd

  Copy full SHA for 3e002cd

• Recreated the SPARQLStore, and added the specialized UniProtStore. Still missing to define the search method.

  crisely09

  committed
  47f8b0c

  Copy full SHA for 47f8b0c

• Modified the search method of the sparql store. Resources are retrieved. Missing mappings.

  crisely09

  committed
  5200b3b

  Copy full SHA for 5200b3b

• Updated notebook with search example.

  crisely09

  committed
  a01af1e

  Copy full SHA for a01af1e

• Added a draft of UniProt mappings.

  crisely09

  committed
  8d7bea7

  Copy full SHA for 8d7bea7

• Make Databases be new archetype. Updated most methods, missing search, sparql, and tests.

  crisely09

  committed
  686aea4

  Copy full SHA for 686aea4

• Adding the missing file.

  crisely09

  committed
  573ae50

  Copy full SHA for 573ae50

• Sorted mapping functions. Missing tests.

  crisely09

  committed
  2520b7f

  Copy full SHA for 2520b7f

• Improved Protein mappings.

  crisely09

  committed
  79b44bc

  Copy full SHA for 79b44bc

• Implemented mappings methods in RdfModel and update Database classes accordingly.

  crisely09

  committed
  2cfabf3

  Copy full SHA for 2cfabf3

• Rebased and added unit tests for SPARQLStore and StoreDatabase.

  crisely09

  committed
  a7da898

  Copy full SHA for a7da898

• Added WebServiceDatabase. Missing tests and improved download methods.

  crisely09

  committed
  b837bc8

  Copy full SHA for b837bc8

• Adding missing file.

  crisely09

  committed
  9433b1f

  Copy full SHA for 9433b1f

• Some changes.

  crisely09

  committed
  761e114

  Copy full SHA for 761e114

• Added DemoDB folder.

  crisely09

  committed
  96c227c

  Copy full SHA for 96c227c

• Make types in db_sources optional

  crisely09

  committed
  ad6b5fd

  Copy full SHA for ad6b5fd

• Some changes.

  crisely09

  committed
  539c75c

  Copy full SHA for 539c75c

• Added initial unit tests for WebService Database.

  crisely09

  committed
  264ba9a

  Copy full SHA for 264ba9a

• Update tests for webservice databases.

  crisely09

  committed
  dd7d22d

  Copy full SHA for dd7d22d

• Resolve conflicts with old methods

  crisely09

  committed
  5fd39bc

  Copy full SHA for 5fd39bc

Commits on Oct 15, 2023

• Merge branch 'master' into dev-resources

  MFSY

  authored
  0f64c3d

  Copy full SHA for 0f64c3d

Commits on Oct 19, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  d94e5a7

  Copy full SHA for d94e5a7

• Add mapper and mapping methods to SPARQL store

  crisely09

  committed
  b26fefc

  Copy full SHA for b26fefc

Commits on Oct 26, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  811ed11

  Copy full SHA for 811ed11

• Small mixes

  crisely09

  committed
  b443b1c

  Copy full SHA for b443b1c

• Add self to tests in classes

  crisely09

  committed
  3c6f952

  Copy full SHA for 3c6f952

Commits on Oct 27, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  29b481e

  Copy full SHA for 29b481e