input.glodap: add regrid and download_and_process #1458
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| name: Build and test | |
| on: push | |
| jobs: | |
| gfortran: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| RDMAV_FORK_SAFE: 1 | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 # enable OpenMPI oversubscribe (old convention) | |
| PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe # enable OpenMPI oversubscribe (new convention) | |
| OMPI_MCA_state_base_verbose: 5 | |
| OMPI_MCA_mca_base_component_show_load_errors: 1 | |
| TMPDIR: /tmp # workaround too-long-paths for OpenMPI on Mac | |
| I_MPI_FABRICS: shm #:ofi | |
| FI_PROVIDER: sockets #tcp | |
| defaults: | |
| run: | |
| shell: ${{ matrix.os == 'windows-latest' && 'cmd /C call {0}' || 'bash -el {0}' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Clone | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| ssh-key: ${{ secrets.BB_TESTING_SSH }} | |
| - name: Clone getm-setups | |
| run: | | |
| git clone https://git.code.sf.net/p/getm/getm-setups | |
| env: | |
| GIT_CLONE_PROTECTION_ACTIVE: false | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| activate-environment: pygetm | |
| - name: Compile (Linux/Mac) | |
| if: matrix.os != 'windows-latest' | |
| run: source ./install | |
| - name: Compile (Windows) | |
| if: matrix.os == 'windows-latest' | |
| run: install.bat | |
| - name: Verify source directory is clean | |
| run: | | |
| git status --porcelain | |
| - name: Test utilities | |
| run: | | |
| python -m pygetm.input.glodap -h | |
| python -m pygetm.input.woa -h | |
| python -m pygetm.input.igotm -h | |
| - name: Run test suite | |
| run: | | |
| cd python/tests | |
| python -m unittest -v | |
| mpiexec -n 2 python test_domain.py -v | |
| mpiexec -n 2 python test_parallel_advection.py -v | |
| env: | |
| GETM_SETUPS_DIR: ../../getm-setups | |
| - name: Test box with spherical coordinates | |
| run: | | |
| cd python/examples | |
| python box_spherical.py ../../getm-setups/box_spherical --start "2004-01-01 00:00:00" --stop "2004-01-03 00:00:00" | |
| - name: Test North Sea in 2D barotropic mode | |
| run: | | |
| cd python/examples | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" --runtype 1 | |
| - name: Test North Sea in 3D baroclinic mode | |
| run: | | |
| cd python/examples | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" | |
| - name: Test North Sea restarts | |
| run: | | |
| cd python/examples | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" --no_boundaries --no_rivers --debug_output | |
| mv -v north_sea_2d.nc north_sea_2d_ref.nc | |
| mv -v north_sea_3d.nc north_sea_3d_ref.nc | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-03 00:00:00" --no_boundaries --no_rivers --debug_output --save_restart res.nc | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" --no_boundaries --no_rivers --debug_output --load_restart res.nc | |
| pygetm-compare-nc north_sea_2d.nc north_sea_2d_ref.nc --itime1 -1 --itime2 -1 -v | |
| pygetm-compare-nc north_sea_3d.nc north_sea_3d_ref.nc --itime1 -1 --itime2 -1 -v | |
| - name: Test North Sea restarts with rivers | |
| run: | | |
| cd python/examples | |
| rm -fv *.nc | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" --no_boundaries --debug_output | |
| mv -v north_sea_2d.nc north_sea_2d_ref.nc | |
| mv -v north_sea_3d.nc north_sea_3d_ref.nc | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-03 00:00:00" --no_boundaries --debug_output --save_restart res.nc | |
| python north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" --no_boundaries --debug_output --load_restart res.nc | |
| pygetm-compare-nc north_sea_2d.nc north_sea_2d_ref.nc --itime1 -1 --itime2 -1 -v | |
| pygetm-compare-nc north_sea_3d.nc north_sea_3d_ref.nc --itime1 -1 --itime2 -1 -v | |
| - name: Test North Sea scaling | |
| run: | | |
| cd python/examples | |
| pygetm-test-scaling --nmax 4 --compare north_sea_2d.nc --compare north_sea_3d.nc north_sea.py ../../getm-setups/NorthSea --stop "2006-01-04 00:00:00" | |
| - name: Run notebooks | |
| run: | | |
| conda install -c conda-forge ipython jupyterlab ipympl cmocean matplotlib | |
| cd python/examples | |
| ipython --matplotlib tk -c "%run grids.ipynb" | |
| ipython --matplotlib tk -c "%run test_advection.ipynb" | |
| ipython --matplotlib tk -c "%run test_gotm_and_gsw.ipynb" | |
| ipython --matplotlib tk -c "%run test_2d_periodic.ipynb" | |
| ipython --matplotlib tk -c "%run test_lock_exchange.ipynb" | |
| ipython --matplotlib tk -c "%run Kelvin_wave_in_a_channel.ipynb" |