updated tests, added extensive

test/extensive.sh

@@ -0,0 +1,43 @@
+#!/bin/bash
+
+URL="https://gtgseq.s3.amazonaws.com/ont-r10-dna/NA24385/raw/PGXX22394_reads.blow5"
+READ_LIST="test/data/raw/PGXX22394_reads_chr22_readid.list"
+OUT="test/data/out/"
+BLOW_OUT="${OUT}reads.blow5"
+EXP="363428f5351918ebcaf6f0f4a95e755c"
+THREADS="512"
+
+die() {
+	echo "$1" >&2
+	echo
+	exit 1
+}
+
+if [ "$1" = 'mem' ]; then
+    mem=1
+else
+    mem=0
+fi
+
+ex() {
+    if [ $mem -eq 1 ]; then
+        valgrind --leak-check=full --error-exitcode=1 "$@"
+    else
+        "$@"
+    fi
+}
+
+echo_test_name() {
+    printf '\n--%s--\n' "$1"
+}
+
+# clean out dir
+test -d ${OUT} && rm -r ${OUT}
+mkdir ${OUT} || die "mkdir failed"
+
+# large tests
+TESTCASE_NAME="chr22_diff"
+echo_test_name ${TESTCASE_NAME}
+rm ${OUT}*
+ex ./slow5curl get ${URL} -o ${BLOW_OUT} -l ${READ_LIST} -t ${THREADS} || die "Running the tool failed for test: ${TESTCASE_NAME}"
+[[ $(md5sum ${BLOW_OUT} | cut -d' ' -f1 ) == ${EXP} ]] || die "diff failed for test: ${TESTCASE_NAME}"

test/test.sh

@@ -36,6 +36,7 @@ echo_test_name() {
     printf '\n--%s--\n' "$1"
 }
 
+# clean out dir
 test -d ${OUT} && rm -r ${OUT}
 mkdir ${OUT} || die "mkdir failed"