Fix build on linux arm64 #45
Workflow file for this run
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| name: LocusPocus CI Build | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.11, 3.12] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install | |
| run: | | |
| sudo apt-get update -q | |
| sudo apt-get install libcurl4-openssl-dev libssl-dev libpango1.0-dev libcairo2-dev libyaml-dev | |
| python -m pip install --upgrade pip | |
| python -m pip install pyyaml pycurl pandas | |
| python -m pip install setuptools | |
| python -m pip install pytest pytest-cov pycodestyle | |
| data/scripts/github-actions-prereqs.sh | |
| - name: Style check | |
| run: make style | |
| - name: Test with pytest | |
| run: | | |
| export PATH=$HOME/local/bin:$PATH | |
| export LD_LIBRARY_PATH=$HOME/local/lib | |
| make test ci-test | |
| build-aarch64: | |
| name: Build on Linux ARM64 / Python 3.11 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Build and test on Linux ARM64 | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: aarch64 | |
| distro: ubuntu22.04 | |
| githubToken: ${{ github.token }} | |
| dockerRunArgs: | | |
| --volume "${PWD}:/AEGeAn" | |
| install: | | |
| set -x | |
| apt-get update -q | |
| apt-get install -y libcurl4-openssl-dev libssl-dev libpango1.0-dev libcairo2-dev libyaml-dev wget make gcc binutils | |
| # Use conda to be able to install newer Python that is not available in the main Ubuntu repository | |
| mkdir -p ~/miniconda3 | |
| wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh -O ~/miniconda3/miniconda.sh | |
| bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3 | |
| rm -rf ~/miniconda3/miniconda.sh | |
| export PATH=~/miniconda3/bin:$PATH | |
| conda create -n aegean python==3.11.0 | |
| conda init bash | |
| run: | | |
| set -x | |
| export PATH=~/miniconda3/bin:$PATH | |
| set +u # disable failures due to usage of undeclared env vars in .bashrc | |
| export PS1="\u@\h:\w\$ " # needed to fully source ~/.bashrc | |
| source ~/.bashrc # needed to init/enable conda | |
| set -u | |
| conda activate aegean | |
| python --version | |
| conda install --yes pyyaml pycurl pandas setuptools pytest pytest-cov pycodestyle | |
| cd /AEGeAn | |
| # Build | |
| data/scripts/github-actions-prereqs.sh | |
| # Test | |
| export PATH=$HOME/local/bin:$PATH | |
| export LD_LIBRARY_PATH=$HOME/local/lib | |
| make test ci-test |