computing-envs

Docker and Singularity files for single cell analysis on Google Cloud Engine, AWS, and the UCSF Wynton High Performance Computer.

Building Containers

docker build --file <file name> -t <image name> .

singularity build <file name> docker://<docker container>

docker run --rm -p 10000:8888 -e JUPYTER_ENABLE_LAB=yes apblair/ab-JupyterLab_tensorflow_v2.0

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
terra/env1		terra/env1
README.md		README.md
ab-JupyterLab_seurat_v3.2.0_scanpy_v1.4.6.dockerfile		ab-JupyterLab_seurat_v3.2.0_scanpy_v1.4.6.dockerfile
ab-JupyterLab_tensorflow_v2.0.dockerfile		ab-JupyterLab_tensorflow_v2.0.dockerfile
ab-RStudio_seurat_v3.1.4.dockerfile		ab-RStudio_seurat_v3.1.4.dockerfile