Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Internal] [Bug] Metadata validation required fields needs to be fixed #265

Open
jessicarowell opened this issue Feb 11, 2025 · 0 comments
Assignees
Labels
bug Something isn't working

Comments

@jessicarowell
Copy link
Collaborator

Now that we support multiple BioSample packages, we need to adjust the required fields in metadata validation.

Run environment (container, cloud service, HPC, platform, etc.)

Command to replicate the error:

Any Additional Context or Information?

Mandatory for all: sample_name, organism, collection_date, geo_loc_name (except OneHealthEnteric 1.0 - only sample_name, strain)
At least one required:

  • strain, isolate AND host, isolation_source (Microbe 1.0)
  • host, isolation_source (Metagenome 1.0)
  • host, lab_host (Virus 1.0)
  • strain, isolate (Beta-lactamase 1.0, Pathogen-clin 1.0, Pathogen-env 1.0)
@jessicarowell jessicarowell added the bug Something isn't working label Feb 11, 2025
@jessicarowell jessicarowell self-assigned this Feb 11, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

When branches are created from issues, their pull requests are automatically linked.

1 participant