Add natural products

CNIC-Proteomics · Mar 6, 2021 · a5c3435 · a5c3435
1 parent b362388
commit a5c3435
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Showing 44 changed files with 7,153,916 additions and 1,821,693 deletions.
diff --git a/.gitignore b/.gitignore
@@ -54,6 +54,8 @@ webApp/src/TurboPutative/pyModules/pygoslin_library.zip
 ############################
 /tools/Tagger/dbs/scripts/DataBaseGenerator.ipynb
 /tools/Tagger/dbs/scripts/getAllSynonyms.ipynb
+/tools/REname/.ipynb_checkpoints/
+/tools/REname/regex_test.ipynb
 
 # Compilation files #
 #####################

diff --git a/...ssets/files/tests/test1/MS_experiment.xls → ...s/files/tests/test1/MS_experiment (2).xls b/...ssets/files/tests/test1/MS_experiment.xls → ...s/files/tests/test1/MS_experiment (2).xls
diff --git a/...ests/test2/MS_experiment_NEW_SPSS_POS.xls → .../test2/MS_experiment_NEW_SPSS_POS (2).xls b/...ests/test2/MS_experiment_NEW_SPSS_POS.xls → .../test2/MS_experiment_NEW_SPSS_POS (2).xls
diff --git a/desktopApp/app/assets/files/tests/test2/infofeature_POS.xlsx b/desktopApp/app/assets/files/tests/test2/infofeature_POS.xlsx
diff --git a/desktopApp/app/sections/execute/tagger.html b/desktopApp/app/sections/execute/tagger.html
@@ -183,12 +183,12 @@ <h3 style="color:white; font-size: 1.5em; font-weight: 300; font-family: Arial;"
                     <input class="cbTag" type="checkbox" id="drug" name="drug" value="true">
                     <span class="checkmark"></span>                
                 </label>
-                <!--
+
                 <label class="cbContainer">Natural Product
                     <input class="cbTag" type="checkbox" id="naturalProduct" name="naturalProduct" value="true">
                     <span class="checkmark"></span>                
                 </label>
-                -->
+
                 <label class="cbContainer">Microbial Compound
                     <input class="cbTag" type="checkbox" id="microbialCompound" name="microbialCompound" value="true">
                     <span class="checkmark"></span>                
@@ -405,8 +405,8 @@ <h3 style="color:white; font-size: 1.5em; font-weight: 300; font-family: Arial;"
             iniContent += "###";
             iniContent += "Halogenated = " + document.getElementById('halogenated').checked;
             iniContent += "###";
-            // iniContent += "NaturalProduct = " + document.getElementById('naturalProduct').checked;
-            // iniContent += "###";
+            iniContent += "NaturalProduct = " + document.getElementById('naturalProduct').checked;
+            iniContent += "###";
             iniContent += "Peptide = " + document.getElementById('peptide').checked;
             iniContent += "###";
             iniContent += "Plant = " + document.getElementById('plant').checked;
@@ -441,7 +441,7 @@ <h3 style="color:white; font-size: 1.5em; font-weight: 300; font-family: Arial;"
             document.getElementById('halogenated').checked = iniString.match(/\nHalogenated = (true|false)\n/)[1] == "true"? true : false;
             document.getElementById('peptide').checked = iniString.match(/\nPeptide = (true|false)\n/)[1] == "true"? true : false;
             document.getElementById('plant').checked = iniString.match(/\nPlant = (true|false)\n/)[1] == "true"? true : false;
-            // document.getElementById('naturalProduct').checked = iniString.match(/\nNaturalProduct = (true|false)\n/)[1] == "true"? true : false;
+            document.getElementById('naturalProduct').checked = iniString.match(/\nNaturalProduct = (true|false)\n/)[1] == "true"? true : false;
             document.getElementById('outputName').value = iniString.match(/\nOutputName = ([-\w\s\.()]*)\n/)[1];
             document.getElementById('outputColumns').value = iniString.match(/\nOutputColumns = ([\w\s,()]*)\n/)[1];
             document.getElementById('halogenatedRegex').value = iniString.match(/\nHalogenatedRegex = ([^\n]*)\n/)[1];