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Updated all components to newer versions used in the latest CESM #129

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merged 2 commits into from
Apr 5, 2024
Merged

Updated all components to newer versions used in the latest CESM #129

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d3fa90d
Updated all components to newer versions used in the latest CESM:
micaeljtoliveira Apr 3, 2024
06a60ab
Update build script to use latest spack instance.
micaeljtoliveira Apr 4, 2024
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2 changes: 1 addition & 1 deletion CDEPS/CDEPS
Open in desktop
Submodule CDEPS updated 22 files
+23 −50 .github/workflows/extbuild.yml
+2 −2 cime_config/buildlib
+2 −1 datm/CMakeLists.txt
+30 −2 datm/atm_comp_nuopc.F90
+1 −1 datm/cime_config/buildnml
+4 −2 datm/cime_config/config_component.xml
+110 −1 datm/cime_config/namelist_definition_datm.xml
+1 −0 datm/cime_config/stream_definition_datm.xml
+379 −0 datm/datm_datamode_simple_mod.F90
+3 −0 dice/ice_comp_nuopc.F90
+3 −0 dlnd/lnd_comp_nuopc.F90
+1 −1 docn/cime_config/config_component.xml
+2 −1 docn/ocn_comp_nuopc.F90
+1 −1 drof/cime_config/config_component.xml
+2 −1 drof/rof_comp_nuopc.F90
+1 −1 dshr/dshr_mod.F90
+2 −0 dwav/wav_comp_nuopc.F90
+2 −0 share/CMakeLists.txt
+1,048 −0 share/shr_file_mod.F90
+88 −0 share/shr_nl_mod.F90
+35 −21 streams/dshr_strdata_mod.F90
+41 −9 streams/dshr_stream_mod.F90
1 change: 1 addition & 0 deletions CDEPS/CMakeLists.txt
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Expand Up @@ -35,6 +35,7 @@ target_sources(OM3_cdeps_datm PRIVATE
CDEPS/datm/datm_datamode_era5_mod.F90
CDEPS/datm/datm_datamode_gefs_mod.F90
CDEPS/datm/datm_datamode_jra_mod.F90
CDEPS/datm/datm_datamode_simple_mod.F90
extra_sources/datm_datamode_jra55do_mod.F90
)
add_patched_source(OM3_cdeps_datm CDEPS/datm/atm_comp_nuopc.F90)
Expand Down
2 changes: 1 addition & 1 deletion CICE/CICE
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Submodule CICE updated 220 files
104 changes: 52 additions & 52 deletions CICE/CMakeLists.txt
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Expand Up @@ -36,44 +36,45 @@ target_sources(OM3_cice PRIVATE
CICE/cicecore/shared/ice_spacecurve.F90

# Analysis
CICE/cicecore/cicedynB/analysis/ice_diagnostics.F90
CICE/cicecore/cicedynB/analysis/ice_diagnostics_bgc.F90
CICE/cicecore/cicedynB/analysis/ice_history.F90
CICE/cicecore/cicedynB/analysis/ice_history_bgc.F90
CICE/cicecore/cicedynB/analysis/ice_history_drag.F90
CICE/cicecore/cicedynB/analysis/ice_history_fsd.F90
CICE/cicecore/cicedynB/analysis/ice_history_mechred.F90
CICE/cicecore/cicedynB/analysis/ice_history_pond.F90
CICE/cicecore/cicedynB/analysis/ice_history_shared.F90
CICE/cicecore/cicedynB/analysis/ice_history_snow.F90
CICE/cicecore/cicedyn/analysis/ice_diagnostics.F90
CICE/cicecore/cicedyn/analysis/ice_diagnostics_bgc.F90
CICE/cicecore/cicedyn/analysis/ice_history.F90
CICE/cicecore/cicedyn/analysis/ice_history_bgc.F90
CICE/cicecore/cicedyn/analysis/ice_history_drag.F90
CICE/cicecore/cicedyn/analysis/ice_history_fsd.F90
CICE/cicecore/cicedyn/analysis/ice_history_mechred.F90
CICE/cicecore/cicedyn/analysis/ice_history_pond.F90
CICE/cicecore/cicedyn/analysis/ice_history_shared.F90
CICE/cicecore/cicedyn/analysis/ice_history_snow.F90

# Dynamics
CICE/cicecore/cicedynB/dynamics/ice_dyn_eap.F90
CICE/cicecore/cicedynB/dynamics/ice_dyn_evp.F90
CICE/cicecore/cicedynB/dynamics/ice_dyn_evp_1d.F90
CICE/cicecore/cicedynB/dynamics/ice_dyn_shared.F90
CICE/cicecore/cicedynB/dynamics/ice_dyn_vp.F90
CICE/cicecore/cicedynB/dynamics/ice_transport_driver.F90
CICE/cicecore/cicedynB/dynamics/ice_transport_remap.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_core1d.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_eap.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_evp.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_evp1d.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_shared.F90
CICE/cicecore/cicedyn/dynamics/ice_dyn_vp.F90
CICE/cicecore/cicedyn/dynamics/ice_transport_driver.F90
CICE/cicecore/cicedyn/dynamics/ice_transport_remap.F90

# General
CICE/cicecore/cicedynB/general/ice_flux.F90
CICE/cicecore/cicedynB/general/ice_flux_bgc.F90
CICE/cicecore/cicedynB/general/ice_forcing.F90
CICE/cicecore/cicedynB/general/ice_forcing_bgc.F90
CICE/cicecore/cicedynB/general/ice_init.F90
CICE/cicecore/cicedynB/general/ice_state.F90
CICE/cicecore/cicedynB/general/ice_step_mod.F90
CICE/cicecore/cicedyn/general/ice_flux.F90
CICE/cicecore/cicedyn/general/ice_flux_bgc.F90
CICE/cicecore/cicedyn/general/ice_forcing.F90
CICE/cicecore/cicedyn/general/ice_forcing_bgc.F90
CICE/cicecore/cicedyn/general/ice_init.F90
CICE/cicecore/cicedyn/general/ice_state.F90
CICE/cicecore/cicedyn/general/ice_step_mod.F90

# Infrastructure
CICE/cicecore/cicedynB/infrastructure/ice_blocks.F90
CICE/cicecore/cicedynB/infrastructure/ice_domain.F90
CICE/cicecore/cicedynB/infrastructure/ice_grid.F90
CICE/cicecore/cicedynB/infrastructure/ice_memusage.F90
CICE/cicecore/cicedynB/infrastructure/ice_memusage_gptl.c
CICE/cicecore/cicedynB/infrastructure/ice_read_write.F90
CICE/cicecore/cicedynB/infrastructure/ice_restart_driver.F90
CICE/cicecore/cicedynB/infrastructure/ice_restoring.F90
CICE/cicecore/cicedyn/infrastructure/ice_blocks.F90
CICE/cicecore/cicedyn/infrastructure/ice_domain.F90
CICE/cicecore/cicedyn/infrastructure/ice_grid.F90
CICE/cicecore/cicedyn/infrastructure/ice_memusage.F90
CICE/cicecore/cicedyn/infrastructure/ice_memusage_gptl.c
CICE/cicecore/cicedyn/infrastructure/ice_read_write.F90
CICE/cicecore/cicedyn/infrastructure/ice_restart_driver.F90
CICE/cicecore/cicedyn/infrastructure/ice_restoring.F90

# Icepack
CICE/icepack/columnphysics/icepack_aerosol.F90
Expand All @@ -95,6 +96,7 @@ target_sources(OM3_cice PRIVATE
CICE/icepack/columnphysics/icepack_ocean.F90
CICE/icepack/columnphysics/icepack_orbital.F90
CICE/icepack/columnphysics/icepack_parameters.F90
CICE/icepack/columnphysics/icepack_shortwave_data.F90
CICE/icepack/columnphysics/icepack_shortwave.F90
CICE/icepack/columnphysics/icepack_snow.F90
CICE/icepack/columnphysics/icepack_therm_bl99.F90
Expand All @@ -107,51 +109,49 @@ target_sources(OM3_cice PRIVATE
CICE/icepack/columnphysics/icepack_wavefracspec.F90
CICE/icepack/columnphysics/icepack_zbgc.F90
CICE/icepack/columnphysics/icepack_zbgc_shared.F90
CICE/icepack/columnphysics/icepack_zsalinity.F90

# Shared C
CICE/cicecore/cicedynB/infrastructure/ice_shr_reprosum86.c
CICE/cicecore/cicedyn/infrastructure/ice_shr_reprosum86.c

# MPI
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_boundary.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_broadcast.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_communicate.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_exit.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_gather_scatter.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_global_reductions.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_reprosum.F90
CICE/cicecore/cicedynB/infrastructure/comm/mpi/ice_timers.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_boundary.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_broadcast.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_communicate.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_exit.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_gather_scatter.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_global_reductions.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_reprosum.F90
CICE/cicecore/cicedyn/infrastructure/comm/mpi/ice_timers.F90

# NUOPC CMEPS driver
CICE/cicecore/drivers/nuopc/cmeps/CICE_FinalMod.F90
CICE/cicecore/drivers/nuopc/cmeps/CICE_InitMod.F90
CICE/cicecore/drivers/nuopc/cmeps/CICE_RunMod.F90
CICE/cicecore/drivers/nuopc/cmeps/cice_wrapper_mod.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_comp_nuopc.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_import_export.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_mesh_mod.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_prescribed_mod.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_scam.F90
CICE/cicecore/drivers/nuopc/cmeps/ice_shr_methods.F90
)

add_patched_source(OM3_cice CICE/cicecore/drivers/nuopc/cmeps/ice_mesh_mod.F90)
add_patched_source(OM3_cice CICE/cicecore/drivers/nuopc/cmeps/ice_comp_nuopc.F90)

# Select IO source files based on CICE_IO
if(OM3_CICE_IO MATCHES "NetCDF")
target_sources(OM3_cice PRIVATE
CICE/cicecore/cicedynB/infrastructure/io/io_netcdf/ice_history_write.F90
CICE/cicecore/cicedynB/infrastructure/io/io_netcdf/ice_restart.F90
CICE/cicecore/cicedyn/infrastructure/io/io_netcdf/ice_history_write.F90
CICE/cicecore/cicedyn/infrastructure/io/io_netcdf/ice_restart.F90
)
elseif(OM3_CICE_IO MATCHES "PIO")
target_sources(OM3_cice PRIVATE
CICE/cicecore/cicedynB/infrastructure/io/io_pio2/ice_history_write.F90
CICE/cicecore/cicedynB/infrastructure/io/io_pio2/ice_pio.F90
CICE/cicecore/cicedynB/infrastructure/io/io_pio2/ice_restart.F90
CICE/cicecore/cicedyn/infrastructure/io/io_pio2/ice_history_write.F90
CICE/cicecore/cicedyn/infrastructure/io/io_pio2/ice_pio.F90
CICE/cicecore/cicedyn/infrastructure/io/io_pio2/ice_restart.F90
)
elseif(OM3_CICE_IO MATCHES "Binary")
target_sources(OM3_cice PRIVATE
CICE/cicecore/cicedynB/infrastructure/io/io_binary/ice_history_write.F90
CICE/cicecore/cicedynB/infrastructure/io/io_binary/ice_restart.F90
CICE/cicecore/cicedyn/infrastructure/io/io_binary/ice_history_write.F90
CICE/cicecore/cicedyn/infrastructure/io/io_binary/ice_restart.F90
)
endif()

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56 changes: 0 additions & 56 deletions CICE/patches/ice_comp_nuopc.F90.patch
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This file was deleted.

21 changes: 0 additions & 21 deletions CICE/patches/ice_mesh_mod.F90.patch
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This file was deleted.

2 changes: 1 addition & 1 deletion CMEPS/CMEPS
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Submodule CMEPS updated 33 files
+8 −8 .github/workflows/extbuild.yml
+17 −6 .github/workflows/srt.yml
+1 −1 cesm/driver/esmApp.F90
+37 −4 cesm/flux_atmocn/shr_flux_mod.F90
+9 −1 cime_config/buildnml
+45 −24 cime_config/config_component.xml
+13 −18 cime_config/namelist_definition_drv.xml
+1 −1 cime_config/runseq/runseq_TG.py
+53 −53 cime_config/testdefs/testlist_drv.xml
+4 −4 doc/source/addendum/req_attributes.rst
+19 −19 doc/source/esmflds.rst
+1 −1 doc/source/generic.rst
+66 −66 doc/source/introduction.rst
+9 −10 doc/source/prep.rst
+1 −1 mediator/CMakeLists.txt
+1 −1 mediator/ESMFConvenienceMacros.h
+1 −2 mediator/ESMFVersionDefine.h
+2 −2 mediator/Makefile
+22 −2 mediator/esmFldsExchange_cesm_mod.F90
+304 −335 mediator/esmFldsExchange_ufs_mod.F90
+4 −0 mediator/fd_cesm.yaml
+13 −15 mediator/med.F90
+7 −13 mediator/med_fraction_mod.F90
+2 −3 mediator/med_internalstate_mod.F90
+6 −3 mediator/med_io_mod.F90
+14 −12 mediator/med_map_mod.F90
+28 −8 mediator/med_phases_aofluxes_mod.F90
+1 −1 mediator/med_phases_history_mod.F90
+119 −50 mediator/med_phases_ocnalb_mod.F90
+10 −27 mediator/med_phases_prep_atm_mod.F90
+14 −135 mediator/med_phases_prep_ocn_mod.F90
+41 −7 ufs/ccpp/data/MED_typedefs.F90
+99 −6 ufs/ccpp/data/MED_typedefs.meta
2 changes: 1 addition & 1 deletion CMEPS/CMakeLists.txt
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Expand Up @@ -25,7 +25,7 @@ target_sources(OM3_cmeps PRIVATE
CMEPS/mediator/med_merge_mod.F90
CMEPS/mediator/med_constants_mod.F90
CMEPS/mediator/med_kind_mod.F90
CMEPS/mediator/esmFldsExchange_nems_mod.F90
CMEPS/mediator/esmFldsExchange_ufs_mod.F90
CMEPS/mediator/med_phases_prep_lnd_mod.F90
CMEPS/mediator/med_phases_prep_atm_mod.F90
CMEPS/mediator/med_phases_prep_ocn_mod.F90
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38 changes: 22 additions & 16 deletions MOM6/CMakeLists.txt
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Expand Up @@ -28,7 +28,6 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/ALE/coord_hycom.F90
MOM6/src/ALE/coord_rho.F90
MOM6/src/ALE/coord_sigma.F90
MOM6/src/ALE/coord_slight.F90
MOM6/src/ALE/coord_zlike.F90
MOM6/src/ALE/MOM_ALE.F90
MOM6/src/ALE/MOM_hybgen_regrid.F90
Expand All @@ -47,6 +46,7 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/ALE/regrid_edge_values.F90
MOM6/src/ALE/regrid_interp.F90
MOM6/src/ALE/regrid_solvers.F90
MOM6/src/ALE/remapping_attic.F90

MOM6/src/core/MOM_barotropic.F90
MOM6/src/core/MOM_boundary_update.F90
Expand Down Expand Up @@ -83,14 +83,18 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/diagnostics/MOM_spatial_means.F90
MOM6/src/diagnostics/MOM_sum_output.F90
MOM6/src/diagnostics/MOM_wave_speed.F90
MOM6/src/diagnostics/MOM_wave_structure.F90

MOM6/src/equation_of_state/MOM_EOS.F90
MOM6/src/equation_of_state/MOM_EOS_Jackett06.F90
MOM6/src/equation_of_state/MOM_EOS_linear.F90
MOM6/src/equation_of_state/MOM_EOS_NEMO.F90
MOM6/src/equation_of_state/MOM_EOS_Roquet_rho.F90
MOM6/src/equation_of_state/MOM_EOS_Roquet_SpV.F90
MOM6/src/equation_of_state/MOM_EOS_TEOS10.F90
MOM6/src/equation_of_state/MOM_EOS_UNESCO.F90
MOM6/src/equation_of_state/MOM_EOS_Wright.F90
MOM6/src/equation_of_state/MOM_EOS_Wright_full.F90
MOM6/src/equation_of_state/MOM_EOS_Wright_red.F90
MOM6/src/equation_of_state/MOM_temperature_convert.F90
MOM6/src/equation_of_state/MOM_TFreeze.F90

MOM6/src/equation_of_state/TEOS10/gsw_chem_potential_water_t_exact.f90
Expand Down Expand Up @@ -134,7 +138,6 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/framework/MOM_data_override.F90
MOM6/src/framework/MOM_diag_mediator.F90
MOM6/src/framework/MOM_diag_remap.F90
MOM6/src/framework/MOM_diag_vkernels.F90
MOM6/src/framework/MOM_document.F90
MOM6/src/framework/MOM_domains.F90
MOM6/src/framework/MOM_dyn_horgrid.F90
Expand All @@ -147,7 +150,9 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/framework/MOM_interpolate.F90
MOM6/src/framework/MOM_intrinsic_functions.F90
MOM6/src/framework/MOM_io.F90
MOM6/src/framework/MOM_io_file.F90
MOM6/src/framework/MOM_memory_macros.h
MOM6/src/framework/MOM_netcdf.F90
MOM6/src/framework/MOM_random.F90
MOM6/src/framework/MOM_restart.F90
MOM6/src/framework/MOM_safe_alloc.F90
Expand Down Expand Up @@ -197,6 +202,7 @@ target_sources(OM3_mom6 PRIVATE
MOM6/src/parameterizations/lateral/MOM_spherical_harmonics.F90
MOM6/src/parameterizations/lateral/MOM_thickness_diffuse.F90
MOM6/src/parameterizations/lateral/MOM_tidal_forcing.F90
MOM6/src/parameterizations/lateral/MOM_Zanna_Bolton.F90

MOM6/src/parameterizations/stochastic/MOM_stochastics.F90

Expand Down Expand Up @@ -303,18 +309,18 @@ target_sources(OM3_mom6 PRIVATE
MOM6/config_src/external/stochastic_physics/get_stochy_pattern.F90
MOM6/config_src/external/stochastic_physics/stochastic_physics.F90

MOM6/config_src/infra/FMS1/MOM_coms_infra.F90
MOM6/config_src/infra/FMS1/MOM_constants.F90
MOM6/config_src/infra/FMS1/MOM_couplertype_infra.F90
MOM6/config_src/infra/FMS1/MOM_cpu_clock_infra.F90
MOM6/config_src/infra/FMS1/MOM_data_override_infra.F90
MOM6/config_src/infra/FMS1/MOM_diag_manager_infra.F90
MOM6/config_src/infra/FMS1/MOM_domain_infra.F90
MOM6/config_src/infra/FMS1/MOM_ensemble_manager_infra.F90
MOM6/config_src/infra/FMS1/MOM_error_infra.F90
MOM6/config_src/infra/FMS1/MOM_interp_infra.F90
MOM6/config_src/infra/FMS1/MOM_io_infra.F90
MOM6/config_src/infra/FMS1/MOM_time_manager.F90
MOM6/config_src/infra/FMS2/MOM_coms_infra.F90
MOM6/config_src/infra/FMS2/MOM_constants.F90
MOM6/config_src/infra/FMS2/MOM_couplertype_infra.F90
MOM6/config_src/infra/FMS2/MOM_cpu_clock_infra.F90
MOM6/config_src/infra/FMS2/MOM_data_override_infra.F90
MOM6/config_src/infra/FMS2/MOM_diag_manager_infra.F90
MOM6/config_src/infra/FMS2/MOM_domain_infra.F90
MOM6/config_src/infra/FMS2/MOM_ensemble_manager_infra.F90
MOM6/config_src/infra/FMS2/MOM_error_infra.F90
MOM6/config_src/infra/FMS2/MOM_interp_infra.F90
MOM6/config_src/infra/FMS2/MOM_io_infra.F90
MOM6/config_src/infra/FMS2/MOM_time_manager.F90

MOM6/config_src/drivers/nuopc_cap/mom_cap_methods.F90
MOM6/config_src/drivers/nuopc_cap/mom_cap_time.F90
Expand Down
2 changes: 1 addition & 1 deletion MOM6/MOM6
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Submodule MOM6 updated 244 files
2 changes: 1 addition & 1 deletion WW3/WW3
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Submodule WW3 updated 8 files
+2 −0 model/inp/ww3_grid.inp
+2 −0 model/nml/namelists.nml
+16 −7 model/src/CMakeLists.txt
+5 −2 model/src/w3gdatmd.F90
+7 −1 model/src/w3gridmd.F90
+13 −3 model/src/w3iogomd.F90
+2 −2 model/src/w3iogrmd.F90
+5 −3 model/src/wav_shel_inp.F90
9 changes: 3 additions & 6 deletions build.sh
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Expand Up @@ -11,18 +11,15 @@ set -e
SCRIPT_DIR="$(dirname "$(readlink -f "$0")")" # dir of this script

BUILD_TYPES=('Debug' 'Release')
COMPILER_VERSION=2021.6.0
OPENMPI_VERSION=4.1.4


# CMakeLists.txt requires ESMF v8.3.0 or higher, FMS, and ParallelIO, but NCI doesn't supply them, so we use our own installation via spack.
# This is in /g/data/ik11/spack/ which uses https://github.com/COSIMA/spack-config

module purge
module load cmake/3.24.2
module use /g/data/ik11/spack/0.20.1/modules/access-om3/0.x.0/linux-rocky8-cascadelake # requires membership of "ik11" group
module load esmf/8.4.2 fms/git.2021.03.01=2021.03.01 parallelio/2.5.10 fortranxml/4.1.2
module load intel-compiler/${COMPILER_VERSION} openmpi/${OPENMPI_VERSION}
module use /g/data/ik11/spack/0.21.2/modules/access-om3/0.x.0/linux-rocky8-cascadelake # requires membership of "ik11" group
module load esmf/8.5.0 fms/2023.02 parallelio/2.6.2 fortranxml/4.1.2
module load intel-compiler/2021.10.0 openmpi/4.1.5

cd ${SCRIPT_DIR}
for BUILD_TYPE in "${BUILD_TYPES[@]}"; do
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2 changes: 1 addition & 1 deletion share/CESM_share
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Submodule CESM_share updated 1 files
+37 −0 src/shr_file_mod.F90
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