add Artifacts.toml directly in example #8
Annotations
9 errors
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/advanced_reco.md:69-77
```@example advanced_reco
CS = Dict{Symbol,Any}()
CS[:sparseTrafo] = "Wavelet" #sparse trafo
CS[:reg] = L1Regularization(100.) # regularization
CS[:solver] = FISTA # solver
CS[:iterations] = 30
d = reconstruction_MP2RAGE(path_bruker; mean_NR=true,paramsCS = CS)
```
exception =
SystemError: opening file "/home/runner/.julia/artifacts/04cd4c29bb9e2aeb5384fbc70a9af0e1a37ca369/MP2RAGE_CS2/acqp": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base ./error.jl:176
[2] systemerror
@ ./error.jl:175 [inlined]
[3] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base ./iostream.jl:295
[4] open
@ ./iostream.jl:277 [inlined]
[5] open(f::MRIFiles.var"#40#41"{Int64, MRIFiles.JcampdxFile, Vector{String}}, args::String; kwargs::@kwargs{})
@ Base ./io.jl:408
[6] open(f::Function, args::String)
@ Base ./io.jl:407
[7] #read#39
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:197 [inlined]
[8] read (repeats 2 times)
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:195 [inlined]
[9] getindex(b::MRIFiles.BrukerFile, parameter::String)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:47
[10] acqWordSize(b::MRIFiles.BrukerFile)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:243
[11] RawAcquisitionData_MP2RAGE(b::MRIFiles.BrukerFile)
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/bruker_sequence.jl:16
[12] reconstruction_MP2RAGE(path_bruker::String; mean_NR::Bool, paramsCS::Dict{Symbol, Any})
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/reconstruction.jl:5
[13] top-level scope
@ advanced_reco.md:76
[14] eval
@ ./boot.jl:430 [inlined]
[15] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[16] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[17] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[18] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[19] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[20] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[21] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[22] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/advanced_reco.md:81-83
```@example advanced_reco
d_under = reconstruction_MP2RAGE(path_bruker; mean_NR=true)
```
exception =
SystemError: opening file "/home/runner/.julia/artifacts/04cd4c29bb9e2aeb5384fbc70a9af0e1a37ca369/MP2RAGE_CS2/acqp": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base ./error.jl:176
[2] systemerror
@ ./error.jl:175 [inlined]
[3] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base ./iostream.jl:295
[4] open
@ ./iostream.jl:277 [inlined]
[5] open(f::MRIFiles.var"#40#41"{Int64, MRIFiles.JcampdxFile, Vector{String}}, args::String; kwargs::@kwargs{})
@ Base ./io.jl:408
[6] open(f::Function, args::String)
@ Base ./io.jl:407
[7] #read#39
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:197 [inlined]
[8] read (repeats 2 times)
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:195 [inlined]
[9] getindex(b::MRIFiles.BrukerFile, parameter::String)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:47
[10] acqWordSize(b::MRIFiles.BrukerFile)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:243
[11] RawAcquisitionData_MP2RAGE(b::MRIFiles.BrukerFile)
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/bruker_sequence.jl:16
[12] reconstruction_MP2RAGE(path_bruker::String; mean_NR::Bool, paramsCS::Dict{Any, Any})
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/reconstruction.jl:5
[13] top-level scope
@ advanced_reco.md:82
[14] eval
@ ./boot.jl:430 [inlined]
[15] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[16] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[17] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[18] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[19] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[20] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[21] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[22] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/advanced_reco.md:87-110
```@example advanced_reco
begin
f = Figure(size=(500,400))
ax=Axis(f[1,1],title="TI₁ undersampled")
h=heatmap!(ax,abs.(d_under["im_reco"][:,:,60,1,1,1]),colormap=:grays)
ax=Axis(f[1,2],title="TI₁ CS")
h=heatmap!(ax,abs.(d["im_reco"][:,:,60,1,1,1]),colormap=:grays)
ax=Axis(f[2,1],title="UNIT1 undersampled")
h=heatmap!(ax,d_under["T1map"][:,:,60,1,1],colorrange = (500,2000))
ax=Axis(f[2,2],title="UNIT1 CS")
h=heatmap!(ax,d["T1map"][:,:,60,1,1],colorrange = (500,2000))
for ax in f.content # hide decoration befor adding colorbar
hidedecorations!(ax)
end
Colorbar(f[2,3],h,label = "T₁ [ms]", flip_vertical_label=true)
f
end
```
exception =
UndefVarError: `d_under` not defined in `Main.__atexample__named__advanced_reco`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ ./advanced_reco.md:91
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/advanced_reco.md:115-119
```@example advanced_reco
subject_name = "sub_01_cs"
dir_path = "" # directory path where the files will be create
write_bids_MP2RAGE(d,subject_name,dir_path)
```
exception =
UndefVarError: `d` not defined in `Main.__atexample__named__advanced_reco`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ advanced_reco.md:118
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/simple_reco.md:59-61
```@example simple_reco
d = reconstruction_MP2RAGE(path_bruker; mean_NR=true)
```
exception =
SystemError: opening file "/home/runner/.julia/artifacts/04cd4c29bb9e2aeb5384fbc70a9af0e1a37ca369/MP2RAGE_FULLY/acqp": No such file or directory
Stacktrace:
[1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
@ Base ./error.jl:176
[2] systemerror
@ ./error.jl:175 [inlined]
[3] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
@ Base ./iostream.jl:295
[4] open
@ ./iostream.jl:277 [inlined]
[5] open(f::MRIFiles.var"#40#41"{Int64, MRIFiles.JcampdxFile, Vector{String}}, args::String; kwargs::@kwargs{})
@ Base ./io.jl:408
[6] open(f::Function, args::String)
@ Base ./io.jl:407
[7] #read#39
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:197 [inlined]
[8] read (repeats 2 times)
@ ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Jcampdx.jl:195 [inlined]
[9] getindex(b::MRIFiles.BrukerFile, parameter::String)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:47
[10] acqWordSize(b::MRIFiles.BrukerFile)
@ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:243
[11] RawAcquisitionData_MP2RAGE(b::MRIFiles.BrukerFile)
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/bruker_sequence.jl:16
[12] reconstruction_MP2RAGE(path_bruker::String; mean_NR::Bool, paramsCS::Dict{Any, Any})
@ SEQ_BRUKER_a_MP2RAGE_CS_360 ~/work/SEQ_BRUKER_a_MP2RAGE_CS_360/SEQ_BRUKER_a_MP2RAGE_CS_360/src/reconstruction.jl:5
[13] top-level scope
@ simple_reco.md:60
[14] eval
@ ./boot.jl:430 [inlined]
[15] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[16] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[17] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[18] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[19] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[20] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[21] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[22] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/simple_reco.md:76-98
```@example simple_reco
begin
f = Figure(size=(500,400))
ax=Axis(f[1,1],title="TI₁")
h=heatmap!(ax,abs.(d["im_reco"][:,:,60,1,1,1]),colormap=:grays)
ax=Axis(f[1,2],title="TI₂")
h=heatmap!(ax,abs.(d["im_reco"][:,:,60,1,1,2]),colormap=:grays)
ax=Axis(f[2,1],title="UNIT1 / MP2RAGE")
h=heatmap!(ax,d["MP2RAGE"][:,:,60,1,1],colormap=:grays)
ax=Axis(f[2,2],title="UNIT1 / MP2RAGE")
h=heatmap!(ax,d["T1map"][:,:,60,1,1],colorrange = (500,2000))
for ax in f.content # hide decoration befor adding colorbar
hidedecorations!(ax)
end
Colorbar(f[2,3],h,label = "T₁ [ms]", flip_vertical_label=true)
f
end
```
exception =
UndefVarError: `d` not defined in `Main.__atexample__named__simple_reco`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ ./simple_reco.md:80
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/simple_reco.md:103-108
```@example simple_reco
f=Figure()
ax = Axis(f[1,1],xlabel="T₁ [ms]")
lines!(ax,d["LUT"])
f
```
exception =
UndefVarError: `d` not defined in `Main.__atexample__named__simple_reco`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simple_reco.md:106
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/generated/examples/simple_reco.md:113-117
```@example simple_reco
subject_name = "sub_01"
dir_path = "" # directory path where the files will be create
write_bids_MP2RAGE(d,subject_name,dir_path)
```
exception =
UndefVarError: `d` not defined in `Main.__atexample__named__simple_reco`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simple_reco.md:116
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
Documentation
Process completed with exit code 1.
|