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Releases: CaiLiLab/MuRaL

v1.1.2

01 Jul 09:24
e46c976
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  • use a new preprocessing strategy (segmenting the genome and more effective I/O operations)
  • modify data loading process
  • add support for large input sequence lengths (up to 64,000 bp)
  • add a new training control way (without Ray; see train_utils.py, printer_utils.py)
  • update documentation

v1.1.1

12 Jan 15:10
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  • fix a bug in calc_kmer_corr
  • add more doc for the scaling section
  • remove unused code

v1.1.0

28 Mar 01:59
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  • add a new network model (model 3)
  • add support for AdamW optimizer
  • update documentation

v1.0.1

07 Dec 15:31
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  • remove janggu dependency
  • add rtd documentation
  • delete unused code

v1.0.0

13 Aug 14:13
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  • update network model (add middle-scale layers)
  • improve preprocessing code (numpy implementation; HDF5 related code)
  • improve optimization code ('--weight_decay_auto'; '--restart_lr')
  • improve documentation

v0.9.1

25 Oct 01:31
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  • clean unnecessary code
  • update weight initialization for bias
  • add more detailed documentation

v0.9.0

12 Sep 13:02
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  • first public release.