Skip to content
@CardiacModelling

Cardiac Modelling

Codes and Resources from the University of Nottingham's cardiac modelling team and collaborators

Cardiac Modelling Team

Team led by Gary Mirams, and based at the Centre for Mathematical Medicine & Biology, University of Nottingham.

If you are looking for live web-based tools like ApPortal or the Web Lab please see links here.

To find the repos associated with our papers, please see our list of publications which contains a link for each publication.

In addition there are other pinned repos that we expect to be most useful, which may not be associated with papers, for instance:

  • RapidCharacterisationProtocols for our latest protocols that characterise ion currents quickly and efficiently by providing rich information for training mathematical models.
  • fitting-notebooks which give tutorials about how we would fit data from these protocols including lots of important detail on optimisation algorithms, parameter transforms, priors and more.
  • VoltageClampModel which provides code to simulate voltage clamp artefacts, which can be added to any ion channel or action potential model to simulate realistic voltage clamp artefacts for use in forward and inverse problems involving comparison with real experimental data.

Pinned Loading

  1. RapidCharacterisationProtocols RapidCharacterisationProtocols Public

    Collection of experimental protocols in common patch clamp formats for rapid characterisation of ion channels

    Python 4

  2. VoltageClampModel VoltageClampModel Public

    Code to add a mathematical model of voltage-clamp artefacts to your ion channel simulations

    Python 3

  3. fitting-notebooks fitting-notebooks Public

    Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.

    Jupyter Notebook 4 5

Repositories

Showing 10 of 45 repositories
  • CardiacModelling/EricSummer2022’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 6, 2024
  • ionBench Public

    A benchmarking tool for comparing different parameter optimization algorithms for ion channel models

    CardiacModelling/ionBench’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 0 Updated Jul 5, 2024
  • CardiacModelling/ap-nimbus-client’s past year of commit activity
    JavaScript 2 1 5 1 Updated Jul 1, 2024
  • ap-nimbus-app-manager Public

    API for cloudified AP Predict

    CardiacModelling/ap-nimbus-app-manager’s past year of commit activity
    JavaScript 1 0 0 1 Updated Jun 30, 2024
  • CardiacModelling/appredict-docker’s past year of commit activity
    Shell 1 0 1 1 Updated Jun 30, 2024
  • fitting-notebooks Public

    Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.

    CardiacModelling/fitting-notebooks’s past year of commit activity
    Jupyter Notebook 4 5 5 2 Updated Jun 26, 2024
  • markov-builder Public

    Tool for building and manipulating Markov models of ion-channel kinetics

    CardiacModelling/markov-builder’s past year of commit activity
    Python 5 BSD-3-Clause 2 0 1 Updated Jun 25, 2024
  • ap-nimbus Public

    Cardiac modelling in containers

    CardiacModelling/ap-nimbus’s past year of commit activity
    1 1 4 1 Updated Jun 25, 2024
  • BenNevis Public

    "Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.

    CardiacModelling/BenNevis’s past year of commit activity
    Python 2 1 5 0 Updated Jun 20, 2024
  • CardiacModelling/empirical_quantification_of_model_discrepancy’s past year of commit activity
    Python 0 BSD-3-Clause 3 0 0 Updated Jun 14, 2024

Top languages

Loading…

Most used topics

Loading…