Installation problem

[mirams]

Following the instructions I got this:

pmzgm@MACBOOK-H3D2W7YDVJ git % git clone [email protected]:CardiacModelling/BenNevisBenchmark.git
Cloning into 'BenNevisBenchmark'...
remote: Enumerating objects: 1312, done.
remote: Counting objects: 100% (419/419), done.
remote: Compressing objects: 100% (285/285), done.
remote: Total 1312 (delta 225), reused 312 (delta 134), pack-reused 893 (from 1)
Receiving objects: 100% (1312/1312), 54.36 MiB | 5.67 MiB/s, done.
Resolving deltas: 100% (774/774), done.

pmzgm@MACBOOK-H3D2W7YDVJ git % cd BenNevisBenchmark 

pmzgm@MACBOOK-H3D2W7YDVJ BenNevisBenchmark % python3 -m venv venv

pmzgm@MACBOOK-H3D2W7YDVJ BenNevisBenchmark % source venv/bin/activate

(venv) pmzgm@MACBOOK-H3D2W7YDVJ BenNevisBenchmark % pip install -r requirements.txt 
Collecting alembic==1.12.0 (from -r requirements.txt (line 1))
  Downloading alembic-1.12.0-py3-none-any.whl.metadata (7.2 kB)
Collecting anyio==3.7.1 (from -r requirements.txt (line 2))
  Downloading anyio-3.7.1-py3-none-any.whl.metadata (4.7 kB)
Collecting argon2-cffi==23.1.0 (from -r requirements.txt (line 3))
  Using cached argon2_cffi-23.1.0-py3-none-any.whl.metadata (5.2 kB)
Collecting argon2-cffi-bindings==21.2.0 (from -r requirements.txt (line 4))
  Using cached argon2_cffi_bindings-21.2.0-cp38-abi3-macosx_10_9_universal2.whl.metadata (6.7 kB)
Collecting arrow==1.2.3 (from -r requirements.txt (line 5))
  Downloading arrow-1.2.3-py3-none-any.whl.metadata (6.9 kB)
Collecting asttokens==2.2.1 (from -r requirements.txt (line 6))
  Downloading asttokens-2.2.1-py2.py3-none-any.whl.metadata (4.8 kB)
Collecting async-lru==2.0.4 (from -r requirements.txt (line 7))
  Using cached async_lru-2.0.4-py3-none-any.whl.metadata (4.5 kB)
Collecting attrs==23.1.0 (from -r requirements.txt (line 8))
  Downloading attrs-23.1.0-py3-none-any.whl.metadata (11 kB)
Collecting Babel==2.12.1 (from -r requirements.txt (line 9))
  Downloading Babel-2.12.1-py3-none-any.whl.metadata (1.3 kB)
Collecting backcall==0.2.0 (from -r requirements.txt (line 10))
  Downloading backcall-0.2.0-py2.py3-none-any.whl.metadata (2.0 kB)
ERROR: Could not find a version that satisfies the requirement basin==0.0.1 (from versions: 0.1)
ERROR: No matching distribution found for basin==0.0.1

[EricWay1024]

The basin package should be compiled and installed with our basin-problem scripts; thanks for pointing out!

[mirams]

Another one now:

ERROR: Could not find a version that satisfies the requirement nlopt==2.7.1 (from versions: 2.4.2.post1, 2.4.2.post2, 2.6.2, 2.8.0)
ERROR: No matching distribution found for nlopt==2.7.1

[MichaelClerx]

Is it necessary to list and pin all dependencies here?
What are the dependencies if we write them out manually?

[EricWay1024]

Is it necessary to list and pin all dependencies here? What are the dependencies if we write them out manually?

I just added a line to the README file:

Alternatively, you may run pip install numpy pandas matplotlib seaborn scipy nevis optuna optuna-dashboard pints nlopt jupyter ipython pymongo pybind11 python-dotenv.

[mirams]

That worked OK