Remove irrelevant figures and update units in lu models

CardiacModelling · Oct 2, 2024 · 7f53dbe · 7f53dbe
1 parent c144cbf
commit 7f53dbe
Show file tree

Hide file tree

Showing 18 changed files with 45 additions and 45 deletions.
diff --git a/figures/heatmap_chlorpromazine_both_new.png b/figures/heatmap_chlorpromazine_both_new.png
diff --git a/figures/heatmap_dofetilide_both_new.png b/figures/heatmap_dofetilide_both_new.png
diff --git a/figures/heatmap_verapamil_both_new.png b/figures/heatmap_verapamil_both_new.png
diff --git a/methods/models/kemp-m1.mmt b/methods/models/kemp-m1.mmt
@@ -13,7 +13,7 @@ ikr.OD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m10.mmt b/methods/models/kemp-m10.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m11.mmt b/methods/models/kemp-m11.mmt
@@ -15,7 +15,7 @@ ikr.iID = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -51,8 +51,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m12.mmt b/methods/models/kemp-m12.mmt
@@ -14,7 +14,7 @@ ikr.CD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -50,8 +50,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m13.mmt b/methods/models/kemp-m13.mmt
@@ -14,7 +14,7 @@ ikr.CD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -50,8 +50,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m2.mmt b/methods/models/kemp-m2.mmt
@@ -12,7 +12,7 @@ ikr.OD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -48,8 +48,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m2i.mmt b/methods/models/kemp-m2i.mmt
@@ -12,7 +12,7 @@ ikr.ID = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -48,8 +48,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m3.mmt b/methods/models/kemp-m3.mmt
@@ -13,7 +13,7 @@ ikr.OD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m4.mmt b/methods/models/kemp-m4.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m5.mmt b/methods/models/kemp-m5.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m5i.mmt b/methods/models/kemp-m5i.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m6.mmt b/methods/models/kemp-m6.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m7.mmt b/methods/models/kemp-m7.mmt
@@ -13,7 +13,7 @@ ikr.OD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m8.mmt b/methods/models/kemp-m8.mmt
@@ -13,7 +13,7 @@ ikr.OD = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2

diff --git a/methods/models/kemp-m9.mmt b/methods/models/kemp-m9.mmt
@@ -16,7 +16,7 @@ ikr.C3D = 0
 [ikr]
 use physical_constants.R, physical_constants.T, physical_constants.F
 IKr = gkr * O * (membrane.V - nernst.EK)
-    in [nA]
+    in [pA]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current
 
 a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
 z_IO = 0.8209
 z_I3 = 1.842
 
-gkr = 33.3 [uS]
-    in [uS]
+gkr = 33.3 [nS]
+    in [nS]
     oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
 
 dot(C1) = -a_a0 * C1 + b_a0 * C2