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frankiepefrankiepe
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Remove irrelevant figures and update units in lu models
1 parent c144cbf commit 7f53dbe

18 files changed

+45
-45
lines changed

‎figures/heatmap_chlorpromazine_both_new.png

-927 KB
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‎figures/heatmap_dofetilide_both_new.png

-936 KB
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‎figures/heatmap_verapamil_both_new.png

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‎methods/models/kemp-m1.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ ikr.OD = 0
1313
[ikr]
1414
use physical_constants.R, physical_constants.T, physical_constants.F
1515
IKr = gkr * O * (membrane.V - nernst.EK)
16-
in [nA]
16+
in [pA]
1717
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1818

1919
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
4949
z_IO = 0.8209
5050
z_I3 = 1.842
5151

52-
gkr = 33.3 [uS]
53-
in [uS]
52+
gkr = 33.3 [nS]
53+
in [nS]
5454
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5555

5656
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m10.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m11.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -15,7 +15,7 @@ ikr.iID = 0
1515
[ikr]
1616
use physical_constants.R, physical_constants.T, physical_constants.F
1717
IKr = gkr * O * (membrane.V - nernst.EK)
18-
in [nA]
18+
in [pA]
1919
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2020

2121
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -51,8 +51,8 @@ z_O3 = 1.062
5151
z_IO = 0.8209
5252
z_I3 = 1.842
5353

54-
gkr = 33.3 [uS]
55-
in [uS]
54+
gkr = 33.3 [nS]
55+
in [nS]
5656
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5757

5858
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m12.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -14,7 +14,7 @@ ikr.CD = 0
1414
[ikr]
1515
use physical_constants.R, physical_constants.T, physical_constants.F
1616
IKr = gkr * O * (membrane.V - nernst.EK)
17-
in [nA]
17+
in [pA]
1818
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1919

2020
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -50,8 +50,8 @@ z_O3 = 1.062
5050
z_IO = 0.8209
5151
z_I3 = 1.842
5252

53-
gkr = 33.3 [uS]
54-
in [uS]
53+
gkr = 33.3 [nS]
54+
in [nS]
5555
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5656

5757
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m13.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -14,7 +14,7 @@ ikr.CD = 0
1414
[ikr]
1515
use physical_constants.R, physical_constants.T, physical_constants.F
1616
IKr = gkr * O * (membrane.V - nernst.EK)
17-
in [nA]
17+
in [pA]
1818
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1919

2020
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -50,8 +50,8 @@ z_O3 = 1.062
5050
z_IO = 0.8209
5151
z_I3 = 1.842
5252

53-
gkr = 33.3 [uS]
54-
in [uS]
53+
gkr = 33.3 [nS]
54+
in [nS]
5555
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5656

5757
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m2.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -12,7 +12,7 @@ ikr.OD = 0
1212
[ikr]
1313
use physical_constants.R, physical_constants.T, physical_constants.F
1414
IKr = gkr * O * (membrane.V - nernst.EK)
15-
in [nA]
15+
in [pA]
1616
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1717

1818
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -48,8 +48,8 @@ z_O3 = 1.062
4848
z_IO = 0.8209
4949
z_I3 = 1.842
5050

51-
gkr = 33.3 [uS]
52-
in [uS]
51+
gkr = 33.3 [nS]
52+
in [nS]
5353
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5454

5555
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m2i.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -12,7 +12,7 @@ ikr.ID = 0
1212
[ikr]
1313
use physical_constants.R, physical_constants.T, physical_constants.F
1414
IKr = gkr * O * (membrane.V - nernst.EK)
15-
in [nA]
15+
in [pA]
1616
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1717

1818
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -48,8 +48,8 @@ z_O3 = 1.062
4848
z_IO = 0.8209
4949
z_I3 = 1.842
5050

51-
gkr = 33.3 [uS]
52-
in [uS]
51+
gkr = 33.3 [nS]
52+
in [nS]
5353
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5454

5555
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m3.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ ikr.OD = 0
1313
[ikr]
1414
use physical_constants.R, physical_constants.T, physical_constants.F
1515
IKr = gkr * O * (membrane.V - nernst.EK)
16-
in [nA]
16+
in [pA]
1717
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1818

1919
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
4949
z_IO = 0.8209
5050
z_I3 = 1.842
5151

52-
gkr = 33.3 [uS]
53-
in [uS]
52+
gkr = 33.3 [nS]
53+
in [nS]
5454
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5555

5656
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m4.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m5.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m5i.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m6.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m7.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ ikr.OD = 0
1313
[ikr]
1414
use physical_constants.R, physical_constants.T, physical_constants.F
1515
IKr = gkr * O * (membrane.V - nernst.EK)
16-
in [nA]
16+
in [pA]
1717
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1818

1919
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
4949
z_IO = 0.8209
5050
z_I3 = 1.842
5151

52-
gkr = 33.3 [uS]
53-
in [uS]
52+
gkr = 33.3 [nS]
53+
in [nS]
5454
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5555

5656
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m8.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ ikr.OD = 0
1313
[ikr]
1414
use physical_constants.R, physical_constants.T, physical_constants.F
1515
IKr = gkr * O * (membrane.V - nernst.EK)
16-
in [nA]
16+
in [pA]
1717
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
1818

1919
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -49,8 +49,8 @@ z_O3 = 1.062
4949
z_IO = 0.8209
5050
z_I3 = 1.842
5151

52-
gkr = 33.3 [uS]
53-
in [uS]
52+
gkr = 33.3 [nS]
53+
in [nS]
5454
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5555

5656
dot(C1) = -a_a0 * C1 + b_a0 * C2

‎methods/models/kemp-m9.mmt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ ikr.C3D = 0
1616
[ikr]
1717
use physical_constants.R, physical_constants.T, physical_constants.F
1818
IKr = gkr * O * (membrane.V - nernst.EK)
19-
in [nA]
19+
in [pA]
2020
oxmeta: membrane_rapid_delayed_rectifier_potassium_current
2121

2222
a_a0 = a_12 * exp(z_12 * membrane.V / (R*T/F))
@@ -52,8 +52,8 @@ z_O3 = 1.062
5252
z_IO = 0.8209
5353
z_I3 = 1.842
5454

55-
gkr = 33.3 [uS]
56-
in [uS]
55+
gkr = 33.3 [nS]
56+
in [nS]
5757
oxmeta: membrane_rapid_delayed_rectifier_potassium_current_conductance
5858

5959
dot(C1) = -a_a0 * C1 + b_a0 * C2

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