Name		Name	Last commit message	Last commit date
parent directory ..
README.md		README.md
hbmdistribution.py		hbmdistribution.py
hergqc.py		hergqc.py
model_ikr.py		model_ikr.py
parallel_evaluation.py		parallel_evaluation.py
parametertransform.py		parametertransform.py
plot_hbm_func.py		plot_hbm_func.py
priors.py		priors.py
protocols.py		protocols.py
releakcorrect.py		releakcorrect.py

README.md

Libraries

For the code, it requires

myokit (Myokit)
pints (Pints)
matplotlib (Matplotlib)

Methods

It contains

model_ikr: Pints ForwardModel IKr model
parametertransform: parameter transformation functions
priors: Pints LogPrior for IKr model
protocols: protocols for model_ikr
plot_hbm_func.py: plotting functions, mainly for HBM
hbmdistribution: theoretical posterior predictive distribution from HBM

Extra stuffs

hergqc: QC module that run the cell selection (all staircaseramp files in data should pass this QC!)