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CellProfiling

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  1. HPA-Cell-Segmentation HPA-Cell-Segmentation Public

    Python 95 27

  2. HPA-competition-solutions HPA-competition-solutions Public

    Team original solutions for the Human Protein Atlas image classification competition

    Jupyter Notebook 60 21

  3. SingleCellProteogenomics SingleCellProteogenomics Public

    Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

    Python 13 5

  4. HPA-competition HPA-competition Public

    Human Protein Atlas image classification competition

    Jupyter Notebook 13 3

  5. subcell-embed subcell-embed Public

    Codebase for training the SubCell models

    Python 12 3

  6. pipex pipex Public

    A pipeline to transform images into valuable analysis items

    Python 9 2

Repositories

Showing 10 of 55 repositories
  • cam_acq Public

    Python project to control microscope through client-server program.

    CellProfiling/cam_acq’s past year of commit activity
    Python 5 Apache-2.0 0 1 0 Updated Apr 1, 2025
  • camacq-plugins Public

    Plugins for camacq

    CellProfiling/camacq-plugins’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 1, 2025
  • ell_code_template Public
    CellProfiling/ell_code_template’s past year of commit activity
    Python 0 0 0 0 Updated Mar 22, 2025
  • HPACellSegmentatorPortable Public

    Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries

    CellProfiling/HPACellSegmentatorPortable’s past year of commit activity
    Python 0 0 0 0 Updated Mar 22, 2025
  • decode-experiments Public

    Repository hosting protocol files and parameters for DECODE robot setup in the Lundberg Lab

    CellProfiling/decode-experiments’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Mar 18, 2025
  • SubCellPortable Public

    This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images

    CellProfiling/SubCellPortable’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Mar 13, 2025
  • pipex Public

    A pipeline to transform images into valuable analysis items

    CellProfiling/pipex’s past year of commit activity
    Python 9 MIT 2 2 0 Updated Mar 10, 2025
  • bioe-postdoc-chalktalk Public

    Website for the BioE Postdoc Chalk Talk

    CellProfiling/bioe-postdoc-chalktalk’s past year of commit activity
    HTML 0 0 0 1 Updated Feb 17, 2025
  • subcell-embed Public

    Codebase for training the SubCell models

    CellProfiling/subcell-embed’s past year of commit activity
    Python 12 MIT 3 0 0 Updated Feb 17, 2025
  • Squid Public Forked from Cephla-Lab/Squid
    CellProfiling/Squid’s past year of commit activity
    Python 0 BSD-3-Clause 39 0 0 Updated Feb 8, 2025
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