Support VTK 9 #19
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| name: test-vtk | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "**" | |
| jobs: | |
| test-conda: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| vtk-version: ["7.1", "8.2", "9.2"] | |
| steps: | |
| - name: checkout chaste | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/Chaste | |
| ref: develop | |
| path: Chaste | |
| submodules: recursive | |
| - name: checkout pychaste | |
| uses: actions/checkout@v4 | |
| with: | |
| path: Chaste/projects/PyChaste | |
| submodules: recursive | |
| - name: install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake g++ xvfb | |
| - name: setup conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: latest | |
| generate-run-shell: false | |
| init-shell: bash | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - pychaste | |
| environment-name: test-env | |
| create-args: >- | |
| boost-cpp | |
| fftw | |
| hdf5=[build=*mpi_mpich*] | |
| matplotlib | |
| metis | |
| mpich | |
| notebook | |
| numpy | |
| parmetis | |
| petsc<3.19 | |
| petsc4py<3.19 | |
| pip | |
| setuptools | |
| six | |
| sundials<7.0 | |
| tbb-devel | |
| vtk=${{ matrix.vtk-version }} | |
| wheel | |
| xerces-c | |
| xsd | |
| xvfbwrapper | |
| xorg-libxext | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| - name: fix cmake paths | |
| run: | | |
| find $CONDA_PREFIX \ | |
| -type f \ | |
| -name '*.cmake' \ | |
| -exec sed -i.bak 's|/usr/lib64/libXext.so|libXext.so|g' {} \; | |
| shell: bash -el {0} | |
| - name: make build directory | |
| run: | | |
| mkdir -p build | |
| - name: configure pychaste | |
| run: | | |
| export PETSC_DIR=$CONDA_PREFIX | |
| export HDF5_ROOT=$CONDA_PREFIX | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DPython3_EXECUTABLE=$(which python3) \ | |
| -DCMAKE_LIBRARY_PATH="${CONDA_PREFIX}/lib" \ | |
| -DCMAKE_PREFIX_PATH="${CONDA_PREFIX}" \ | |
| -DCMAKE_INSTALL_PREFIX="${CONDA_PREFIX}" \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DBOOST_ROOT="${CONDA_PREFIX}" \ | |
| -DHDF5_C_COMPILER_EXECUTABLE="${CONDA_PREFIX}/bin/h5pcc" \ | |
| -DVTK_DIR=${CONDA_PREFIX} \ | |
| -DXERCESC_INCLUDE="${CONDA_PREFIX}/include" \ | |
| -DXERCESC_LIBRARY="${CONDA_PREFIX}/lib/libxerces-c.so" \ | |
| -DXSD_EXECUTABLE="${CONDA_PREFIX}/bin/xsd" \ | |
| ../Chaste/ | |
| working-directory: build | |
| shell: bash -el {0} | |
| - name: build pychaste | |
| run: | | |
| cmake --build . --parallel $(nproc) --target project_PyChaste | |
| working-directory: build | |
| shell: bash -el {0} | |
| - name: build pychaste python module | |
| run: | | |
| cmake --build . --parallel $(nproc) --target project_PyChaste_Python | |
| working-directory: build | |
| shell: bash -el {0} | |
| - name: install pychaste | |
| run: | | |
| pip install . | |
| working-directory: build/projects/PyChaste/python | |
| shell: bash -el {0} | |
| - name: run tests | |
| run: | | |
| xvfb-run \ | |
| --server-args="-screen 0 1024x768x24" \ | |
| ctest -j $(nproc) -L PyChaste --output-on-failure | |
| working-directory: build | |
| shell: bash -el {0} |