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@Cibiv

CIBIV - Center for Integrative Bioinformatics Vienna

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  1. IQ-TREE IQ-TREE Public archive

    Efficient phylogenomic software by maximum likelihood

    C++ 188 44

  2. NextGenMap NextGenMap Public

    NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

    C++ 86 8

  3. Teaser Teaser Public

    A tool to benchmark mappers and different parameters within minutes

    HTML 43 10

  4. trumicount trumicount Public

    Correctly counting molecules using unique molecular identifiers (UMIs)

    TeX 9 1

  5. BODscore BODscore Public

    Scoring method for identified SNPs

    C 4

  6. gwpcR gwpcR Public

    Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

    R 3

Repositories

Showing 10 of 19 repositories
  • Cibiv.github.io Public

    CIBIV website

    Cibiv/Cibiv.github.io’s past year of commit activity
    HTML 2 0 0 0 Updated Nov 18, 2024
  • GuaCAMOLE Public

    GuaCAMOLE (Guanosine Cytosine Aware Metagenomic Opulence Least squares Estimation) algorithm for the efficient detection and removal of GC bias from metagenomic samples

    Cibiv/GuaCAMOLE’s past year of commit activity
    Python 1 AGPL-3.0 0 0 0 Updated Nov 12, 2024
  • pyrganoid Public
    Cibiv/pyrganoid’s past year of commit activity
    Python 1 0 0 0 Updated Apr 30, 2024
  • EvoNAPS Public

    EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

    Cibiv/EvoNAPS’s past year of commit activity
    Python 1 3 0 0 Updated Mar 13, 2024
  • SANjar Public

    Simulates the deterministic and stochastic versions of the SAN model

    Cibiv/SANjar’s past year of commit activity
    R 0 0 0 0 Updated Feb 9, 2024
  • ModelRevelator Public
    Cibiv/ModelRevelator’s past year of commit activity
    Python 1 MIT 4 1 0 Updated Mar 28, 2023
  • ipoolseq-pipeline Public

    A pipeline for the analysis of iPool-Seq data

    Cibiv/ipoolseq-pipeline’s past year of commit activity
    Python 0 AGPL-3.0 1 0 0 Updated Feb 11, 2022
  • IQ-TREE Public archive

    Efficient phylogenomic software by maximum likelihood

    Cibiv/IQ-TREE’s past year of commit activity
    C++ 188 GPL-2.0 44 94 2 Updated Nov 4, 2021
  • trumicount Public

    Correctly counting molecules using unique molecular identifiers (UMIs)

    Cibiv/trumicount’s past year of commit activity
    TeX 9 AGPL-3.0 1 2 0 Updated Sep 24, 2021
  • gwpcR Public

    Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

    Cibiv/gwpcR’s past year of commit activity
    R 3 AGPL-3.0 0 0 0 Updated Aug 23, 2021
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