MoranSim: simulation of a well-mixed Moran process with constant selection

Created by Lucas Alves de Melo Pontes

Objective

The objective of this repository is to execute simulations of Moran's model without spatial restrictions.

The implementation of Moran's model is based on:

• the Ricardo Martínez-Garcia's classes on "Stochastical Mathematical Modeling" during the Serrapilheira-ICTP QBio course;
• the description presented in the chapters of the book "NOVAK, M. A. Evolutionary dynamics: Exploring the equations of life. Belknap Press of Harvard University Press. 378 p., Cambridge, Massachusetts, and London, England, 2006".

Structure of repository

endProject_compMethods/
├── data/
|     ├── raw/
|     └── processed/
├── docs/
├── graph/
├── R/
├── R_modules/
└── README.md

The order of execution for the scripts is given by the script filenames inside the "R/" directory.

"R_modules/" contains the modules required for the scripts in the "R/" directory.

"data/" contains the tables obtained through the simulation.

"docs/" contains the report file and its supporting files.

"graph/" contains the generated graphs.

Required libraries

The required libraries for this repository are: stringr, ggplot2, reshape2 e dplyr.