added Aqua

ComputationalPsychiatry · May 4, 2024 · 169018a · 169018a
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commit 169018a
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Showing 9 changed files with 12 additions and 6 deletions.
diff --git a/docs/Project.toml b/docs/Project.toml
@@ -1,5 +1,6 @@
 [deps]
 ActionModels = "320cf53b-cc3b-4b34-9a10-0ecb113566a3"
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"

diff --git a/src/ActionModels_variations/utils/get_history.jl b/src/ActionModels_variations/utils/get_history.jl
@@ -7,7 +7,7 @@ Gets the history of a state from a specific node in an HGF. A vector of states c
 
 Gets the history of all states for a specific node in an HGF. If only a node object is passed, it will return the history of all states in that node. If only an HGF object is passed, it will return the history of all states in all nodes in the HGF.
 """
-function ActionModels.get_history() end
+# function ActionModels.get_history() end
 
 ### For getting histories of specific states ###
 function ActionModels.get_history(hgf::HGF, target_state::Tuple{String,String})

diff --git a/src/ActionModels_variations/utils/get_parameters.jl b/src/ActionModels_variations/utils/get_parameters.jl
@@ -7,7 +7,7 @@ Gets a single parameter value from a specific node in an HGF. A vector of parame
 
 Gets all parameter values for a specific node in an HGF. If only a node object is passed, returns all parameters in that node. If only an HGF object is passed, returns all parameters of all nodes in the HGF.
 """
-function ActionModels.get_parameters() end
+# function ActionModels.get_parameters() end
 
 ### For getting a specific parameter from a specific node ###
 #For parameters other than coupling strengths

diff --git a/src/ActionModels_variations/utils/get_states.jl b/src/ActionModels_variations/utils/get_states.jl
@@ -7,7 +7,7 @@ Gets a single state value from a specific node in an HGF. A vector of states can
 
 Gets all parameter values for a specific node in an HGF. If only a node object is passed, returns all states in that node. If only an HGF object is passed, returns all states of all nodes in the HGF.
 """
-function ActionModels.get_states() end
+# function ActionModels.get_states() end
 
 
 ### For getting a specific state from a specific node ###

diff --git a/src/ActionModels_variations/utils/give_inputs.jl b/src/ActionModels_variations/utils/give_inputs.jl
@@ -3,7 +3,7 @@ give_inputs!(hgf::HGF, inputs)
 
 Give inputs to an agent. Input can be a single value, a vector of values, or an array of values.
 """
-function ActionModels.give_inputs!() end
+# function ActionModels.give_inputs!() end
 
 
 ### Giving a single input ###

diff --git a/src/ActionModels_variations/utils/set_parameters.jl b/src/ActionModels_variations/utils/set_parameters.jl
@@ -7,7 +7,7 @@ Setting a single parameter value for an HGF.
 
 Set mutliple parameters values for an HGF. Takes a dictionary of parameter names and values.
 """
-function ActionModels.set_parameters!() end
+# function ActionModels.set_parameters!() end
 
 ### For setting a single parameter ###
 

diff --git a/src/HierarchicalGaussianFiltering.jl b/src/HierarchicalGaussianFiltering.jl
@@ -4,7 +4,7 @@ module HierarchicalGaussianFiltering
 using ActionModels, Distributions, RecipesBase
 
 #Export functions
-export init_node, init_hgf, premade_hgf, check_hgf, check_node, update_hgf!
+export init_node, init_hgf, premade_hgf, check_hgf, update_hgf!
 export get_prediction, get_surprise
 export premade_agent,
     init_agent, plot_predictive_simulation, plot_trajectory, plot_trajectory!

diff --git a/test/Project.toml b/test/Project.toml
@@ -4,6 +4,7 @@ Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
+GR = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
 Glob = "c27321d9-0574-5035-807b-f59d2c89b15c"
 JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
 JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899"

diff --git a/test/testsuite/Aqua.jl b/test/testsuite/Aqua.jl
@@ -0,0 +1,4 @@
+using HierarchicalGaussianFiltering
+using Aqua
+Aqua.test_all(HierarchicalGaussianFiltering,
+ambiguities = false)