Release 3.0.0

.gitignore

@@ -1,32 +1,157 @@
+# Created by https://www.toptal.com/developers/gitignore/api/intellij,java,maven
+# Edit at https://www.toptal.com/developers/gitignore?templates=intellij,java,maven
+
+### Intellij ###
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+# User-specific stuff
+.idea/
+.idea/**/workspace.xml
+.idea/**/tasks.xml
+.idea/**/usage.statistics.xml
+.idea/**/dictionaries
+.idea/**/shelf
+
+# eclipse project file
+.settings/
+.classpath
+.project
+
+# Generated files
+.idea/**/contentModel.xml
+
+# Sensitive or high-churn files
+.idea/**/dataSources/
+.idea/**/dataSources.ids
+.idea/**/dataSources.local.xml
+.idea/**/sqlDataSources.xml
+.idea/**/dynamic.xml
+.idea/**/uiDesigner.xml
+.idea/**/dbnavigator.xml
+
+# Gradle
+.idea/**/gradle.xml
+.idea/**/libraries
+
+# Gradle and Maven with auto-import
+# When using Gradle or Maven with auto-import, you should exclude module files,
+# since they will be recreated, and may cause churn.  Uncomment if using
+# auto-import.
+# .idea/artifacts
+# .idea/compiler.xml
+# .idea/jarRepositories.xml
+# .idea/modules.xml
+# .idea/*.iml
+# .idea/modules
+# *.iml
+# *.ipr
+
+# CMake
+cmake-build-*/
+
+# Mongo Explorer plugin
+.idea/**/mongoSettings.xml
+
+# File-based project format
+*.iws
+
+# IntelliJ
+out/
+
+# mpeltonen/sbt-idea plugin
+.idea_modules/
+
+# JIRA plugin
+atlassian-ide-plugin.xml
+
+# Cursive Clojure plugin
+.idea/replstate.xml
+
+# Crashlytics plugin (for Android Studio and IntelliJ)
+com_crashlytics_export_strings.xml
+crashlytics.properties
+crashlytics-build.properties
+fabric.properties
+
+# Editor-based Rest Client
+.idea/httpRequests
+
+# Android studio 3.1+ serialized es.uniovi.reflection.progquery.cache file
+.idea/caches/build_file_checksums.ser
+
+### Intellij Patch ###
+# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721
+
+# *.iml
+# modules.xml
+# .idea/misc.xml
+# *.ipr
+
+# Sonarlint plugin
+# https://plugins.jetbrains.com/plugin/7973-sonarlint
+.idea/**/sonarlint/
+
+# SonarQube Plugin
+# https://plugins.jetbrains.com/plugin/7238-sonarqube-community-plugin
+.idea/**/sonarIssues.xml
+
+# Markdown Navigator plugin
+# https://plugins.jetbrains.com/plugin/7896-markdown-navigator-enhanced
+.idea/**/markdown-navigator.xml
+.idea/**/markdown-navigator-enh.xml
+.idea/**/markdown-navigator/
+
+# Cache file creation bug
+# See https://youtrack.jetbrains.com/issue/JBR-2257
+.idea/$CACHE_FILE$
+
+# CodeStream plugin
+# https://plugins.jetbrains.com/plugin/12206-codestream
+.idea/codestream.xml
+
+### Java ###
+# Compiled class file
 *.class
-ProgQuery/build/*
-ProgQuery/neo4j/*
-ProgQuery/data/*
-ProgQuery/bin/
-ProgQuery/bon/
-ProgQuery/temp/*
-ProgQuery/.gradle/*
-ProgQuery/.classpath
-ProgQuery/.project
-ProgQuery/cdAdapted.bat
-ProgQuery/cdAdaptedUpdated.bat
-ProgQuery/pdgTest_wiggle.bat
-ProgQuery/python_measurement.bat
-ProgQuery/startup.test.csv
-ProgQuery/*.pyc
-ProgQuery/compilePlugin.bat
-ProgQuery/compileAndExecuteWithArgs.bat
-ProgQuery/executePlugin--.bat
-ProgQuery/loadExecuteAndView.bat
-ProgQuery/.metadata/*
-*.pyc
-*.py
-*.csv
-*.bat
-*.txt
+
+# Log file
 *.log
-*.exe
-*.gexf
-binaries_bad/*
-__pycache__/*
-ProgQuery/javac.*.args
+
+# BlueJ files
+*.ctxt
+
+# Mobile Tools for Java (J2ME)
+.mtj.tmp/
+
+# Package Files #
+*.jar
+*.war
+*.nar
+*.ear
+*.zip
+*.tar.gz
+*.rar
+
+# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
+hs_err_pid*
+
+### Maven ###
+target/
+*/target/
+pom.xml.tag
+pom.xml.releaseBackup
+pom.xml.versionsBackup
+pom.xml.next
+release.properties
+dependency-reduced-pom.xml
+buildNumber.properties
+.mvn/timing.properties
+# https://github.com/takari/maven-wrapper#usage-without-binary-jar
+.mvn/wrapper/maven-wrapper.jar
+.flattened-pom.xml
+
+# End of https://www.toptal.com/developers/gitignore/api/intellij,java,maven
+
+#Added by me
+/bin/
+/data/