Skip to content
@DEploid-dev

DEploid-dev

DEploid development repositories. See README (https://github.com/DEploid-dev/README) for more details.

Pinned Loading

  1. README README Public

    DEploid-dev README

  2. DEploid DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

    C++ 20 10

  3. DEploid.utils DEploid.utils Public

    R 1 1

  4. DEploid-r DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and…

    R 1 3

  5. DEploid-vcf-lib DEploid-vcf-lib Public

    C++ 1

  6. DEploid-Lasso-lib DEploid-Lasso-lib Public

    Forked from shajoezhu/DEploid-Lasso-lib

    R

Repositories

Showing 10 of 17 repositories
  • DEploid.utils Public
    DEploid-dev/DEploid.utils’s past year of commit activity
    R 1 Apache-2.0 1 2 0 Updated Dec 23, 2024
  • DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…

    DEploid-dev/DEploid-r’s past year of commit activity
    R 1 GPL-3.0 3 11 0 Updated Dec 23, 2024
  • DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

    DEploid-dev/DEploid’s past year of commit activity
    C++ 20 GPL-3.0 10 23 0 Updated Dec 23, 2024
  • DEploid-vcf-lib Public
    DEploid-dev/DEploid-vcf-lib’s past year of commit activity
    C++ 1 Apache-2.0 0 2 0 Updated Dec 23, 2024
  • DEploid-Bestpractices-github-actions Public
    DEploid-dev/DEploid-Bestpractices-github-actions’s past year of commit activity
    0 Apache-2.0 0 2 0 Updated Jan 10, 2021
  • deploid-dev.github.io Public
    DEploid-dev/deploid-dev.github.io’s past year of commit activity
    0 0 0 0 Updated Jun 6, 2020
  • DEploid-Lasso-lib Public Forked from shajoezhu/DEploid-Lasso-lib
    DEploid-dev/DEploid-Lasso-lib’s past year of commit activity
    R 0 Apache-2.0 1 0 0 Updated Oct 31, 2019
  • DEploid-Bestpractices-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Bestpractices-Benchmark-in_silico_field’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_field’s past year of commit activity
    R 0 Apache-2.0 1 2 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_lab_mixed_4s Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_lab_mixed_4s’s past year of commit activity
    R 0 Apache-2.0 1 0 0 Updated Aug 4, 2019
View all repositories

Top languages

Loading…

Most used topics

Loading…