Cicd action #16
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - dev | |
| push: | |
| branches: | |
| - dev | |
| jobs: | |
| Build-and-Test-LinuxOsx: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| container: | |
| image: ubuntu:20.04 | |
| steps: | |
| - uses: actions/checkout@c85c95e3d7251135ab7dc9ce3241c5835cc595a9 | |
| with: | |
| submodules: true | |
| ref: dev | |
| - uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: isis | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| - name: Check build environment | |
| run: | | |
| conda list | |
| conda env export | |
| - name: Download ISIS data | |
| run: | | |
| mkdir isis_data | |
| mkdir isis_testData | |
| which rclone | |
| rclone mount asc_s3://asc-isisdata/usgs_data isis_data --config=${GITHUB_WORKSPACE}/isis/config/rclone.conf --daemon | |
| rclone mount asc_s3://asc-isisdata/isis_testData isis_testData --config=${GITHUB_WORKSPACE}/isis/config/rclone.conf --daemon | |
| - name: Build ISIS | |
| run: | | |
| sudo apt autoremove python3 -y | |
| mkdir -p build | |
| cp ${GITHUB_WORKSPACE}/isis/IsisPreferences ${GITHUB_WORKSPACE}/build/ | |
| export ISISDATA=${GITHUB_WORKSPACE}/isis_data | |
| export ISISTESTDATA=${GITHUB_WORKSPACE}/isis_testData | |
| export ISISROOT=${GITHUB_WORKSPACE}/build/ | |
| export PATH=$PATH:${GITHUB_WORKSPACE}/build/bin/ | |
| cd build | |
| ls ${GITHUB_WORKSPACE}/isis_data | |
| ls ${CONDA_PREFIX}/include/cholmod* | |
| cmake -DisisData=${GITHUB_WORKSPACE}/isis_data -DisisTestData=${GITHUB_WORKSPACE}/isis_testData -DJP2KFLAG=OFF -DCMAKE_BUILD_TYPE=RELEASE -Wdeprecated -GNinja ../isis | |
| ninja -j8 | |
| - name: Run ISIS tests | |
| run: | | |
| cd build | |
| export ISISDATA=${GITHUB_WORKSPACE}/isis_data | |
| export ISISTESTDATA=${GITHUB_WORKSPACE}/isis_testData | |
| export ISISROOT=${GITHUB_WORKSPACE}/build/ | |
| export PATH=$PATH:${GITHUB_WORKSPACE}/build/bin/ | |
| ctest -R '.' -E '(_app_|_unit_|_module_)' -j 8 --output-on-failure --timeout 10000 | |