fix singularity bind

Daniel-VM · Jul 29, 2024 · 2859dae · 2859dae
1 parent 2a5e47e
commit 2859dae
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog
@@ -63,7 +63,7 @@ singularity exec \\
     /data/bi/pipelines/singularity-images/singularity-emmtyper.0.2.0--py_0 emmtyper \\
     -w blast \\
     --keep \\
-    --blast_db "${blastdb_path}/cdc_emm_database29042024" \\
+    --blast_db "\${blastdb_path}/cdc_emm_database29042024" \\
     --percent-identity 95 \\
     --culling-limit 5 \\
     --output 01-typing/results_emmtyper.out \\