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DeMarcoLab · Sep 21, 2023 · 586533d · 586533d
1 parent 254a622
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Showing 13 changed files with 23 additions and 341 deletions.
diff --git a/setup.cfg b/setup.cfg
@@ -31,11 +31,10 @@ project_urls =
 [options]
 packages = find:
 install_requires =
-    numpy
-    magicgui
-    qtpy
+    fibsem>=0.2.4a0
+    autolamella>=0.2.4a1
 
-python_requires = >=3.8
+python_requires = >=3.9
 include_package_data = True
 package_dir =
     =src

diff --git a/src/napari_openfibsem/__init__.py b/src/napari_openfibsem/__init__.py
@@ -4,16 +4,9 @@
 except ImportError:
     __version__ = "unknown"
 
-from ._reader import napari_get_reader
-from ._sample_data import make_sample_data
-from ._widget import ExampleQWidget, example_magic_widget
-from ._writer import write_multiple, write_single_image
+from .app import autolamella_ui, autoliftout_ui
 
 __all__ = (
-    "napari_get_reader",
-    "write_single_image",
-    "write_multiple",
-    "make_sample_data",
-    "ExampleQWidget",
-    "example_magic_widget",
+    "autolamella_ui",
+    "autoliftout_ui",
 )
diff --git a/src/napari_openfibsem/_reader.py b/src/napari_openfibsem/_reader.py
diff --git a/src/napari_openfibsem/_sample_data.py b/src/napari_openfibsem/_sample_data.py
diff --git a/src/napari_openfibsem/_tests/__init__.py b/src/napari_openfibsem/_tests/__init__.py
diff --git a/src/napari_openfibsem/_tests/test_reader.py b/src/napari_openfibsem/_tests/test_reader.py
diff --git a/src/napari_openfibsem/_tests/test_sample_data.py b/src/napari_openfibsem/_tests/test_sample_data.py
diff --git a/src/napari_openfibsem/_tests/test_widget.py b/src/napari_openfibsem/_tests/test_widget.py
diff --git a/src/napari_openfibsem/_tests/test_writer.py b/src/napari_openfibsem/_tests/test_writer.py
diff --git a/src/napari_openfibsem/_widget.py b/src/napari_openfibsem/_widget.py
diff --git a/src/napari_openfibsem/_writer.py b/src/napari_openfibsem/_writer.py
diff --git a/src/napari_openfibsem/app.py b/src/napari_openfibsem/app.py
@@ -0,0 +1,7 @@
+
+
+from autolamella.ui.AutoLamellaUI import AutoLamellaUI
+from autolamella.liftout.ui.AutoLiftoutUIv2 import AutoLiftoutUIv2
+autolamella_ui = AutoLamellaUI
+autoliftout_ui = AutoLiftoutUIv2
+
diff --git a/src/napari_openfibsem/napari.yaml b/src/napari_openfibsem/napari.yaml
@@ -2,47 +2,14 @@ name: napari-openfibsem
 display_name: OpenFIBSEM Napari
 contributions:
   commands:
-    - id: napari-openfibsem.get_reader
-      python_name: napari_openfibsem._reader:napari_get_reader
-      title: Open data with OpenFIBSEM Napari
-    - id: napari-openfibsem.write_multiple
-      python_name: napari_openfibsem._writer:write_multiple
-      title: Save multi-layer data with OpenFIBSEM Napari
-    - id: napari-openfibsem.write_single_image
-      python_name: napari_openfibsem._writer:write_single_image
-      title: Save image data with OpenFIBSEM Napari
-    - id: napari-openfibsem.make_sample_data
-      python_name: napari_openfibsem._sample_data:make_sample_data
-      title: Load sample data from OpenFIBSEM Napari
-    - id: napari-openfibsem.make_qwidget
-      python_name: napari_openfibsem._widget:ExampleQWidget
-      title: Make example QWidget
-    - id: napari-openfibsem.make_magic_widget
-      python_name: napari_openfibsem._widget:example_magic_widget
-      title: Make example magic widget
-    - id: napari-openfibsem.make_func_widget
-      python_name: napari_openfibsem._widget:example_function_widget
-      title: Make example function widget
-  readers:
-    - command: napari-openfibsem.get_reader
-      accepts_directories: false
-      filename_patterns: ['*.npy']
-  writers:
-    - command: napari-openfibsem.write_multiple
-      layer_types: ['image*','labels*']
-      filename_extensions: []
-    - command: napari-openfibsem.write_single_image
-      layer_types: ['image']
-      filename_extensions: ['.npy']
-  sample_data:
-    - command: napari-openfibsem.make_sample_data
-      display_name: OpenFIBSEM Napari
-      key: unique_id.1
+    - id: napari-openfibsem.autolamella
+      python_name: napari_openfibsem.app:autolamella_ui
+      title: AutoLamella UI
+    - id: napari-openfibsem.autoliftout
+      python_name: napari_openfibsem.app:autoliftout_ui
+      title: AutoLiftout UI
   widgets:
-    - command: napari-openfibsem.make_qwidget
-      display_name: Example QWidget
-    - command: napari-openfibsem.make_magic_widget
-      display_name: Example Magic Widget
-    - command: napari-openfibsem.make_func_widget
-      autogenerate: true
-      display_name: Example Function Widget
+    - command: napari-openfibsem.autolamella
+      display_name: AutoLamella UI
+    - command: napari-openfibsem.autoliftout
+      display_name: AutoLiftout UI