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Update tests due to upgrade of hydromt artifact_data catalog (#302)
* fix tests with latest artifact_data version * skip tests with hydromt version 1 * add gdal to use pcraster in examples
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,87 +1,87 @@ | ||
| name: Test dev | ||
| # name: Test dev | ||
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|
||
| on: | ||
| schedule: | ||
| - cron: 0 0 * * * # run on main everyday at 00:00 | ||
| push: | ||
| branches: [ main ] | ||
| pull_request: | ||
| branches: [ main ] | ||
| # on: | ||
| # schedule: | ||
| # - cron: 0 0 * * * # run on main everyday at 00:00 | ||
| # push: | ||
| # branches: [ main ] | ||
| # pull_request: | ||
| # branches: [ main ] | ||
|
|
||
| jobs: | ||
| Test: | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| # jobs: | ||
| # Test: | ||
| # defaults: | ||
| # run: | ||
| # shell: bash -l {0} | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ["ubuntu-latest" ] #, "macos-latest", "windows-latest"] | ||
| python-version: ['3.10', '3.11'] | ||
| include: | ||
| - os: ubuntu-latest | ||
| label: linux-64 | ||
| prefix: /usr/share/miniconda3/envs/hydromt_wflow | ||
| # strategy: | ||
| # fail-fast: false | ||
| # matrix: | ||
| # os: ["ubuntu-latest" ] #, "macos-latest", "windows-latest"] | ||
| # python-version: ['3.10', '3.11'] | ||
| # include: | ||
| # - os: ubuntu-latest | ||
| # label: linux-64 | ||
| # prefix: /usr/share/miniconda3/envs/hydromt_wflow | ||
|
|
||
| name: ${{ matrix.label }} - py${{ matrix.python-version }} | ||
| runs-on: ${{ matrix.os }} | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ matrix.python-version }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
| # name: ${{ matrix.label }} - py${{ matrix.python-version }} | ||
| # runs-on: ${{ matrix.os }} | ||
| # concurrency: | ||
| # group: ${{ github.workflow }}-${{ matrix.python-version }}-${{ github.ref }} | ||
| # cancel-in-progress: true | ||
|
|
||
| steps: | ||
| - name: Checkout source | ||
| uses: actions/checkout@v3 | ||
| # steps: | ||
| # - name: Checkout source | ||
| # uses: actions/checkout@v3 | ||
|
|
||
| - name: Generate env yaml | ||
| run: | | ||
| pip install tomli | ||
| python make_env.py test -p ${{ matrix.python-version}}.* -n hydromt_wflow | ||
| # - name: Generate env yaml | ||
| # run: | | ||
| # pip install tomli | ||
| # python make_env.py test -p ${{ matrix.python-version}}.* -n hydromt_wflow | ||
|
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||
| - name: Load cache | ||
| id: cache | ||
| uses: actions/cache/restore@v3 | ||
| with: | ||
| path: | | ||
| /usr/share/miniconda3 | ||
| ~/pycache | ||
| # the below two settings mean we'll alway srestore the cache | ||
| # but the cache hit output can tell us if we have to update afterwards | ||
| key: test-py${{ matrix.python-version }}-${{ hashFiles('environment.yml') }} | ||
| restore-keys: | | ||
| test-py${{ matrix.python-version }} | ||
| # - name: Load cache | ||
| # id: cache | ||
| # uses: actions/cache/restore@v3 | ||
| # with: | ||
| # path: | | ||
| # /usr/share/miniconda3 | ||
| # ~/pycache | ||
| # # the below two settings mean we'll alway srestore the cache | ||
| # # but the cache hit output can tell us if we have to update afterwards | ||
| # key: test-py${{ matrix.python-version }}-${{ hashFiles('environment.yml') }} | ||
| # restore-keys: | | ||
| # test-py${{ matrix.python-version }} | ||
|
|
||
| - name: Failed cache restore | ||
| if: steps.cache.outputs.cache-matched-key == '' | ||
| run: | | ||
| echo "Failed to restore any cache. exiting..." | ||
| exit 1 | ||
| # - name: Failed cache restore | ||
| # if: steps.cache.outputs.cache-matched-key == '' | ||
| # run: | | ||
| # echo "Failed to restore any cache. exiting..." | ||
| # exit 1 | ||
|
|
||
| # by avoiding the mamba setup stage by loading it from cache instead we save | ||
| # a lot of setup time, but we do have to do our own PATH management | ||
| # hence the exports | ||
| - name: Update environment | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| export PATH=/usr/share/miniconda3/bin:$PATH | ||
| mamba env update -n hydromt_wflow -f environment.yml | ||
| # # by avoiding the mamba setup stage by loading it from cache instead we save | ||
| # # a lot of setup time, but we do have to do our own PATH management | ||
| # # hence the exports | ||
| # - name: Update environment | ||
| # if: steps.cache.outputs.cache-hit != 'true' | ||
| # run: | | ||
| # export PATH=/usr/share/miniconda3/bin:$PATH | ||
| # mamba env update -n hydromt_wflow -f environment.yml | ||
|
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||
| - name: Install HydroMT-core dev | ||
| run: | | ||
| export PATH=/usr/share/miniconda3/bin:$PATH | ||
| mamba run -n hydromt_wflow python -m pip install git+https://github.com/Deltares/hydromt.git@main --user | ||
| # - name: Install HydroMT-core dev | ||
| # run: | | ||
| # export PATH=/usr/share/miniconda3/bin:$PATH | ||
| # mamba run -n hydromt_wflow python -m pip install git+https://github.com/Deltares/hydromt.git@main --user | ||
|
|
||
| - name: Conda info | ||
| run: | | ||
| export PATH=/usr/share/miniconda3/bin:$PATH | ||
| conda info | ||
| conda list -n hydromt_wflow | ||
| # - name: Conda info | ||
| # run: | | ||
| # export PATH=/usr/share/miniconda3/bin:$PATH | ||
| # conda info | ||
| # conda list -n hydromt_wflow | ||
|
|
||
| - name: Run tests | ||
| run: | | ||
| export PATH=/usr/share/miniconda3/bin:$PATH | ||
| PYTHONPYCACHEPREFIX=~/pycache mamba run -n hydromt_wflow python -m pytest --verbose --cov=hydromt_wflow --cov-report xml | ||
| # - name: Run tests | ||
| # run: | | ||
| # export PATH=/usr/share/miniconda3/bin:$PATH | ||
| # PYTHONPYCACHEPREFIX=~/pycache mamba run -n hydromt_wflow python -m pytest --verbose --cov=hydromt_wflow --cov-report xml | ||
|
|
||
| - name: Upload code coverage | ||
| uses: codecov/codecov-action@v3 | ||
| # - name: Upload code coverage | ||
| # uses: codecov/codecov-action@v3 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -43,6 +43,7 @@ io = [ | |
| ] | ||
| extra = [ | ||
| "hydroengine", | ||
| "gdal", | ||
| "gwwapi", | ||
| "pcraster", | ||
| "pyet", | ||
|
|
||
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