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CI issue fixing + tests #51

CI issue fixing + tests

CI issue fixing + tests #51

Workflow file for this run

name: HTTomo tests
on:
pull_request:
branches:
- main
push:
branches:
- main
jobs:
iris-gpu:
runs-on: iris-gpu
container:
image: nvidia/cuda:11.6.2-devel-ubi8
env:
NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }}
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout repository code
uses: actions/checkout@v4
- name: Create conda environment
uses: mamba-org/setup-micromamba@v1
with:
environment-file: conda/environment.yml
environment-name: httomo
post-cleanup: 'all'
init-shell: bash
- name: Install httomo-dev
run: |
micromamba activate httomo
pip install .[dev]
pip install --upgrade --force-reinstall pillow
micromamba list
- name: Generate yaml templates
run: |
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/httomo_modules.yaml -o ./httomo/yaml_templates/httomo
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/tomopy/tomopy_modules.yaml -o ./httomo/yaml_templates/tomopy
python ./scripts/yaml_unsupported_tomopy_remove.py -t ./httomo/yaml_templates/tomopy -l ./httomo/methods_database/packages/external/tomopy/tomopy.yaml
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolib/httomolib_modules.yaml -o ./httomo/yaml_templates/httomolib
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo/yaml_templates/httomolibgpu
- name: Run tests
run: |
pytest tests/