HTTomo main build (weekly) #3
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| name: HTTomo main build (weekly) | |
| on: | |
| schedule: | |
| - cron: '0 0 * * 1' # At 00:00 on Monday | |
| jobs: | |
| install-httomo-main-test-iris: | |
| runs-on: iris-gpu | |
| container: | |
| image: nvidia/cuda:11.6.2-devel-ubi8 | |
| env: | |
| NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: conda/environment.yml | |
| environment-name: httomo | |
| post-cleanup: 'all' | |
| init-shell: bash | |
| - name: Install httomo-main | |
| run: | | |
| micromamba activate httomo | |
| pip install .[dev] | |
| micromamba list | |
| - name: Generate yaml templates | |
| run: | | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/httomo_modules.yaml -o ./httomo/yaml_templates/httomo | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/tomopy/tomopy_modules.yaml -o ./httomo/yaml_templates/tomopy | |
| python ./scripts/yaml_unsupported_tomopy_remove.py -t ./httomo/yaml_templates/tomopy -l ./httomo/methods_database/packages/external/tomopy/tomopy.yaml | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolib/httomolib_modules.yaml -o ./httomo/yaml_templates/httomolib | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo/yaml_templates/httomolibgpu | |
| - name: Run tests | |
| run: | | |
| pytest tests/ | |
| conda-upload: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: "main" | |
| fetch-depth: 0 | |
| # setup Python 3.10 | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies with Conda | |
| run: | | |
| $CONDA/bin/conda install -c conda-forge conda-build | |
| $CONDA/bin/conda install -c conda-forge anaconda-client | |
| $CONDA/bin/conda update conda | |
| $CONDA/bin/conda update conda-build | |
| $CONDA/bin/conda list | |
| - name: Decrypt a secret | |
| run: ./.scripts/decrypt_secret.sh | |
| env: | |
| LARGE_SECRET_PASSPHRASE: ${{ secrets.LARGE_SECRET_PASSPHRASE }} | |
| - name: Build and upload the package to httomo conda cloud | |
| env: | |
| LABEL: main | |
| run: | | |
| chmod +x ./.scripts/conda_upload.sh | |
| ./.scripts/conda_upload.sh | |