Weekly conda package test #3
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name: Weekly conda package test | |
on: | |
schedule: | |
- cron: '55 0 * * 1' # At 00:55 every Monday | |
jobs: | |
download-test-iris: | |
runs-on: iris-gpu | |
container: | |
image: nvidia/cuda:11.6.2-devel-ubi8 | |
env: | |
NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Checkout repository code | |
uses: actions/checkout@v4 | |
with: | |
ref: "main" | |
fetch-depth: 0 | |
- name: Create conda environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: conda/environment.yml | |
environment-name: httomo | |
post-cleanup: 'all' | |
init-shell: bash | |
- name: Install httomo | |
run: | | |
micromamba activate httomo | |
micromamba install "httomo/linux-64::httomo * py310_openmpi_regular*" -c conda-forge -c astra-toolbox -c rapidsai -y | |
micromamba list | |
- name: Generate yaml templates | |
run: | | |
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/httomo_modules.yaml -o ./httomo/yaml_templates/httomo | |
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/tomopy/tomopy_modules.yaml -o ./httomo/yaml_templates/tomopy | |
python ./scripts/yaml_unsupported_tomopy_remove.py -t ./httomo/yaml_templates/tomopy -l ./httomo/methods_database/packages/external/tomopy/tomopy.yaml | |
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolib/httomolib_modules.yaml -o ./httomo/yaml_templates/httomolib | |
python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo/yaml_templates/httomolibgpu | |
- name: Run tests | |
run: | | |
pytest tests/ |