CI issue fixing + tests #63

	name: HTTomo tests

	on:
	pull_request:
	branches:
	- main
	push:
	branches:
	- main

	jobs:
	iris-gpu:
	runs-on: iris-gpu
	container:
	image: nvidia/cuda:11.6.2-devel-ubi8
	env:
	NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }}

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout repository code
	uses: actions/checkout@v4

	- name: Create conda environment
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: conda/environment.yml
	environment-name: httomo
	post-cleanup: 'all'
	init-shell: bash

	- name: Install httomo-dev
	run: \|
	micromamba activate httomo
	pip install .[dev]
	pip install --upgrade --force-reinstall pillow
	micromamba list

	- name: Generate yaml templates
	run: \|
	python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/httomo_modules.yaml -o ./httomo/yaml_templates/httomo
	python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/tomopy/tomopy_modules.yaml -o ./httomo/yaml_templates/tomopy
	python ./scripts/yaml_unsupported_tomopy_remove.py -t ./httomo/yaml_templates/tomopy -l ./httomo/methods_database/packages/external/tomopy/tomopy.yaml
	python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolib/httomolib_modules.yaml -o ./httomo/yaml_templates/httomolib
	python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo/yaml_templates/httomolibgpu

	- name: Run tests
	run: \|
	pytest tests/

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