Apply black formatting to the codebase and add enforced status checks on PRs before merging #2

	name: HTTomo dev build

	on:
	pull_request:
	branches:
	- main

	jobs:
	build-conda-upload:
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout repository code
	uses: actions/checkout@v3
	with:
	ref: "dev"
	fetch-depth: 0


	# setup Python 3.10
	- name: Setup Python 3.10
	uses: actions/setup-python@v2
	with:
	python-version: '3.10'

	- name: Install dependencies with Conda
	run: \|
	$CONDA/bin/conda install -c conda-forge conda-build
	$CONDA/bin/conda install -c conda-forge anaconda-client
	$CONDA/bin/conda update conda
	$CONDA/bin/conda update conda-build
	$CONDA/bin/conda list

	- name: Decrypt a secret
	run: ./.scripts/decrypt_secret.sh
	env:
	LARGE_SECRET_PASSPHRASE: ${{ secrets.LARGE_SECRET_PASSPHRASE }}

	- name: Build and upload the package (dev) to httomo conda cloud
	env:
	LABEL: dev
	run: \|
	chmod +x ./.scripts/conda_upload.sh
	./.scripts/conda_upload.sh
	run: exit 0

	install-run-tests:
	runs-on: ubuntu-latest
	needs: build-conda-upload

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout repository code
	uses: actions/checkout@v3

	# setup Python 3.10
	- name: Setup Python 3.10
	uses: actions/setup-python@v2
	with:
	python-version: '3.10'

	- name: Create conda environment
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: conda/environment.yml
	environment-name: httomo
	post-cleanup: 'all'
	init-shell: bash

	- name: Install httomo
	run: \|
	conda install "httomo/linux-64::httomo * py310_openmpi_regular*"
	micromamba list

	- name: Run tests
	run: \|
	pytest tests/
	run: exit 0

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