Move YAML templates dir into httomo/ subdir

Fixes #335
DiamondLightSource · May 22, 2024 · 4429711 · 4429711
1 parent 7efb32b
commit 4429711
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Showing 94 changed files with 9 additions and 27 deletions.
diff --git a/httomo/yaml_checker.py b/httomo/yaml_checker.py
@@ -344,7 +344,7 @@ def _get_template_yaml(conf: PipelineConfig, packages: List) -> List:
     Helper function that fetches template YAML file names associated with methods
     passed.
     """
-    parent_dir = Path(__file__).parent.parent
+    parent_dir = Path(__file__).parent
     templates_dir = os.path.join(parent_dir, "yaml_templates")
     assert os.path.exists(
         templates_dir

diff --git a/...ttomo.data.hdf.loaders/standard_tomo.yaml → ...ttomo.data.hdf.loaders/standard_tomo.yaml b/...ttomo.data.hdf.loaders/standard_tomo.yaml → ...ttomo.data.hdf.loaders/standard_tomo.yaml
diff --git a/...ttomo/httomo.methods/calculate_stats.yaml → ...ttomo/httomo.methods/calculate_stats.yaml b/...ttomo/httomo.methods/calculate_stats.yaml → ...ttomo/httomo.methods/calculate_stats.yaml
diff --git a/yaml_templates/httomo/httomo_modules.yaml → ...yaml_templates/httomo/httomo_modules.yaml b/yaml_templates/httomo/httomo_modules.yaml → ...yaml_templates/httomo/httomo_modules.yaml
diff --git a/...httomolib.misc.images/save_to_images.yaml → ...httomolib.misc.images/save_to_images.yaml b/...httomolib.misc.images/save_to_images.yaml → ...httomolib.misc.images/save_to_images.yaml
diff --git a/...ib/httomolib.misc.morph/data_reducer.yaml → ...ib/httomolib.misc.morph/data_reducer.yaml b/...ib/httomolib.misc.morph/data_reducer.yaml → ...ib/httomolib.misc.morph/data_reducer.yaml
diff --git a/...omolib.misc.segm/binary_thresholding.yaml → ...omolib.misc.segm/binary_thresholding.yaml b/...omolib.misc.segm/binary_thresholding.yaml → ...omolib.misc.segm/binary_thresholding.yaml
diff --git a/.../httomolib.prep.phase/paganin_filter.yaml → .../httomolib.prep.phase/paganin_filter.yaml b/.../httomolib.prep.phase/paganin_filter.yaml → .../httomolib.prep.phase/paganin_filter.yaml
diff --git a/...httomolibgpu.misc.corr/median_filter.yaml → ...httomolibgpu.misc.corr/median_filter.yaml b/...httomolibgpu.misc.corr/median_filter.yaml → ...httomolibgpu.misc.corr/median_filter.yaml
diff --git a/...ttomolibgpu.misc.corr/remove_outlier.yaml → ...ttomolibgpu.misc.corr/remove_outlier.yaml b/...ttomolibgpu.misc.corr/remove_outlier.yaml → ...ttomolibgpu.misc.corr/remove_outlier.yaml
diff --git a/...tomolibgpu.misc.morph/data_resampler.yaml → ...tomolibgpu.misc.morph/data_resampler.yaml b/...tomolibgpu.misc.morph/data_resampler.yaml → ...tomolibgpu.misc.morph/data_resampler.yaml
diff --git a/...omolibgpu.misc.morph/sino_360_to_180.yaml → ...omolibgpu.misc.morph/sino_360_to_180.yaml b/...omolibgpu.misc.morph/sino_360_to_180.yaml → ...omolibgpu.misc.morph/sino_360_to_180.yaml
diff --git a/...molibgpu.misc.rescale/rescale_to_int.yaml → ...molibgpu.misc.rescale/rescale_to_int.yaml b/...molibgpu.misc.rescale/rescale_to_int.yaml → ...molibgpu.misc.rescale/rescale_to_int.yaml
diff --git a/.../distortion_correction_proj_discorpy.yaml → .../distortion_correction_proj_discorpy.yaml b/.../distortion_correction_proj_discorpy.yaml → .../distortion_correction_proj_discorpy.yaml
diff --git a/...ttomolibgpu.prep.normalize/normalize.yaml → ...ttomolibgpu.prep.normalize/normalize.yaml b/...ttomolibgpu.prep.normalize/normalize.yaml → ...ttomolibgpu.prep.normalize/normalize.yaml
diff --git a/...ibgpu.prep.phase/paganin_filter_savu.yaml → ...ibgpu.prep.phase/paganin_filter_savu.yaml b/...ibgpu.prep.phase/paganin_filter_savu.yaml → ...ibgpu.prep.phase/paganin_filter_savu.yaml
diff --git a/...gpu.prep.phase/paganin_filter_tomopy.yaml → ...gpu.prep.phase/paganin_filter_tomopy.yaml b/...gpu.prep.phase/paganin_filter_tomopy.yaml → ...gpu.prep.phase/paganin_filter_tomopy.yaml
diff --git a/...libgpu.prep.stripe/remove_all_stripe.yaml → ...libgpu.prep.stripe/remove_all_stripe.yaml b/...libgpu.prep.stripe/remove_all_stripe.yaml → ...libgpu.prep.stripe/remove_all_stripe.yaml
diff --git a/...p.stripe/remove_stripe_based_sorting.yaml → ...p.stripe/remove_stripe_based_sorting.yaml b/...p.stripe/remove_stripe_based_sorting.yaml → ...p.stripe/remove_stripe_based_sorting.yaml
diff --git a/...olibgpu.prep.stripe/remove_stripe_ti.yaml → ...olibgpu.prep.stripe/remove_stripe_ti.yaml b/...olibgpu.prep.stripe/remove_stripe_ti.yaml → ...olibgpu.prep.stripe/remove_stripe_ti.yaml
diff --git a/...pu/httomolibgpu.recon.algorithm/CGLS.yaml → ...pu/httomolibgpu.recon.algorithm/CGLS.yaml b/...pu/httomolibgpu.recon.algorithm/CGLS.yaml → ...pu/httomolibgpu.recon.algorithm/CGLS.yaml
diff --git a/...gpu/httomolibgpu.recon.algorithm/FBP.yaml → ...gpu/httomolibgpu.recon.algorithm/FBP.yaml b/...gpu/httomolibgpu.recon.algorithm/FBP.yaml → ...gpu/httomolibgpu.recon.algorithm/FBP.yaml
diff --git a/...pu/httomolibgpu.recon.algorithm/SIRT.yaml → ...pu/httomolibgpu.recon.algorithm/SIRT.yaml b/...pu/httomolibgpu.recon.algorithm/SIRT.yaml → ...pu/httomolibgpu.recon.algorithm/SIRT.yaml
diff --git a/...ibgpu.recon.rotation/find_center_360.yaml → ...ibgpu.recon.rotation/find_center_360.yaml b/...ibgpu.recon.rotation/find_center_360.yaml → ...ibgpu.recon.rotation/find_center_360.yaml
diff --git a/...libgpu.recon.rotation/find_center_pc.yaml → ...libgpu.recon.rotation/find_center_pc.yaml b/...libgpu.recon.rotation/find_center_pc.yaml → ...libgpu.recon.rotation/find_center_pc.yaml
diff --git a/...libgpu.recon.rotation/find_center_vo.yaml → ...libgpu.recon.rotation/find_center_vo.yaml b/...libgpu.recon.rotation/find_center_vo.yaml → ...libgpu.recon.rotation/find_center_vo.yaml
diff --git a/...tomopy/tomopy.misc.corr/adjust_range.yaml → ...tomopy/tomopy.misc.corr/adjust_range.yaml b/...tomopy/tomopy.misc.corr/adjust_range.yaml → ...tomopy/tomopy.misc.corr/adjust_range.yaml
diff --git a/...es/tomopy/tomopy.misc.corr/circ_mask.yaml → ...es/tomopy/tomopy.misc.corr/circ_mask.yaml b/...es/tomopy/tomopy.misc.corr/circ_mask.yaml → ...es/tomopy/tomopy.misc.corr/circ_mask.yaml
diff --git a/...tomopy/tomopy.misc.corr/download_all.yaml → ...tomopy/tomopy.misc.corr/download_all.yaml b/...tomopy/tomopy.misc.corr/download_all.yaml → ...tomopy/tomopy.misc.corr/download_all.yaml
diff --git a/...opy/tomopy.misc.corr/gaussian_filter.yaml → ...opy/tomopy.misc.corr/gaussian_filter.yaml b/...opy/tomopy.misc.corr/gaussian_filter.yaml → ...opy/tomopy.misc.corr/gaussian_filter.yaml
diff --git a/...omopy/tomopy.misc.corr/median_filter.yaml → ...omopy/tomopy.misc.corr/median_filter.yaml b/...omopy/tomopy.misc.corr/median_filter.yaml → ...omopy/tomopy.misc.corr/median_filter.yaml
diff --git a/...opy/tomopy.misc.corr/median_filter3d.yaml → ...opy/tomopy.misc.corr/median_filter3d.yaml b/...opy/tomopy.misc.corr/median_filter3d.yaml → ...opy/tomopy.misc.corr/median_filter3d.yaml
diff --git a/...py.misc.corr/median_filter_nonfinite.yaml → ...py.misc.corr/median_filter_nonfinite.yaml b/...py.misc.corr/median_filter_nonfinite.yaml → ...py.misc.corr/median_filter_nonfinite.yaml
diff --git a/...s/tomopy/tomopy.misc.corr/remove_nan.yaml → ...s/tomopy/tomopy.misc.corr/remove_nan.yaml b/...s/tomopy/tomopy.misc.corr/remove_nan.yaml → ...s/tomopy/tomopy.misc.corr/remove_nan.yaml
diff --git a/...s/tomopy/tomopy.misc.corr/remove_neg.yaml → ...s/tomopy/tomopy.misc.corr/remove_neg.yaml b/...s/tomopy/tomopy.misc.corr/remove_neg.yaml → ...s/tomopy/tomopy.misc.corr/remove_neg.yaml
diff --git a/...mopy/tomopy.misc.corr/remove_outlier.yaml → ...mopy/tomopy.misc.corr/remove_outlier.yaml b/...mopy/tomopy.misc.corr/remove_outlier.yaml → ...mopy/tomopy.misc.corr/remove_outlier.yaml
diff --git a/...py/tomopy.misc.corr/remove_outlier1d.yaml → ...py/tomopy.misc.corr/remove_outlier1d.yaml b/...py/tomopy.misc.corr/remove_outlier1d.yaml → ...py/tomopy.misc.corr/remove_outlier1d.yaml
diff --git a/...py/tomopy.misc.corr/remove_outlier3d.yaml → ...py/tomopy.misc.corr/remove_outlier3d.yaml b/...py/tomopy.misc.corr/remove_outlier3d.yaml → ...py/tomopy.misc.corr/remove_outlier3d.yaml
diff --git a/.../tomopy/tomopy.misc.corr/remove_ring.yaml → .../tomopy/tomopy.misc.corr/remove_ring.yaml b/.../tomopy/tomopy.misc.corr/remove_ring.yaml → .../tomopy/tomopy.misc.corr/remove_ring.yaml
diff --git a/...tomopy/tomopy.misc.corr/sobel_filter.yaml → ...tomopy/tomopy.misc.corr/sobel_filter.yaml b/...tomopy/tomopy.misc.corr/sobel_filter.yaml → ...tomopy/tomopy.misc.corr/sobel_filter.yaml
diff --git a/...omopy/tomopy.misc.morph/download_all.yaml → ...omopy/tomopy.misc.morph/download_all.yaml b/...omopy/tomopy.misc.morph/download_all.yaml → ...omopy/tomopy.misc.morph/download_all.yaml
diff --git a/.../tomopy/tomopy.misc.morph/downsample.yaml → .../tomopy/tomopy.misc.morph/downsample.yaml b/.../tomopy/tomopy.misc.morph/downsample.yaml → .../tomopy/tomopy.misc.morph/downsample.yaml
diff --git a/...mplates/tomopy/tomopy.misc.morph/pad.yaml → ...mplates/tomopy/tomopy.misc.morph/pad.yaml b/...mplates/tomopy/tomopy.misc.morph/pad.yaml → ...mplates/tomopy/tomopy.misc.morph/pad.yaml
diff --git a/...py/tomopy.misc.morph/sino_360_to_180.yaml → ...py/tomopy.misc.morph/sino_360_to_180.yaml b/...py/tomopy.misc.morph/sino_360_to_180.yaml → ...py/tomopy.misc.morph/sino_360_to_180.yaml
diff --git a/...mopy/tomopy.misc.morph/trim_sinogram.yaml → ...mopy/tomopy.misc.morph/trim_sinogram.yaml b/...mopy/tomopy.misc.morph/trim_sinogram.yaml → ...mopy/tomopy.misc.morph/trim_sinogram.yaml
diff --git a/...es/tomopy/tomopy.misc.morph/upsample.yaml → ...es/tomopy/tomopy.misc.morph/upsample.yaml b/...es/tomopy/tomopy.misc.morph/upsample.yaml → ...es/tomopy/tomopy.misc.morph/upsample.yaml
diff --git a/...opy/tomopy.prep.alignment/add_jitter.yaml → ...opy/tomopy.prep.alignment/add_jitter.yaml b/...opy/tomopy.prep.alignment/add_jitter.yaml → ...opy/tomopy.prep.alignment/add_jitter.yaml
diff --git a/...mopy/tomopy.prep.alignment/add_noise.yaml → ...mopy/tomopy.prep.alignment/add_noise.yaml b/...mopy/tomopy.prep.alignment/add_noise.yaml → ...mopy/tomopy.prep.alignment/add_noise.yaml
diff --git a/...py/tomopy.prep.alignment/align_joint.yaml → ...py/tomopy.prep.alignment/align_joint.yaml b/...py/tomopy.prep.alignment/align_joint.yaml → ...py/tomopy.prep.alignment/align_joint.yaml
diff --git a/...mopy/tomopy.prep.alignment/align_seq.yaml → ...mopy/tomopy.prep.alignment/align_seq.yaml b/...mopy/tomopy.prep.alignment/align_seq.yaml → ...mopy/tomopy.prep.alignment/align_seq.yaml
diff --git a/...opy/tomopy.prep.alignment/blur_edges.yaml → ...opy/tomopy.prep.alignment/blur_edges.yaml b/...opy/tomopy.prep.alignment/blur_edges.yaml → ...opy/tomopy.prep.alignment/blur_edges.yaml
diff --git a/...alignment/distortion_correction_proj.yaml → ...alignment/distortion_correction_proj.yaml b/...alignment/distortion_correction_proj.yaml → ...alignment/distortion_correction_proj.yaml
diff --git a/...alignment/distortion_correction_sino.yaml → ...alignment/distortion_correction_sino.yaml b/...alignment/distortion_correction_sino.yaml → ...alignment/distortion_correction_sino.yaml
diff --git a/...y/tomopy.prep.alignment/download_all.yaml → ...y/tomopy.prep.alignment/download_all.yaml b/...y/tomopy.prep.alignment/download_all.yaml → ...y/tomopy.prep.alignment/download_all.yaml
diff --git a/...s/tomopy/tomopy.prep.alignment/scale.yaml → ...s/tomopy/tomopy.prep.alignment/scale.yaml b/...s/tomopy/tomopy.prep.alignment/scale.yaml → ...s/tomopy/tomopy.prep.alignment/scale.yaml
diff --git a/...y/tomopy.prep.alignment/shift_images.yaml → ...y/tomopy.prep.alignment/shift_images.yaml b/...y/tomopy.prep.alignment/shift_images.yaml → ...y/tomopy.prep.alignment/shift_images.yaml
diff --git a/...y/tomopy.prep.normalize/download_all.yaml → ...y/tomopy.prep.normalize/download_all.yaml b/...y/tomopy.prep.normalize/download_all.yaml → ...y/tomopy.prep.normalize/download_all.yaml
diff --git a/...mopy/tomopy.prep.normalize/minus_log.yaml → ...mopy/tomopy.prep.normalize/minus_log.yaml b/...mopy/tomopy.prep.normalize/minus_log.yaml → ...mopy/tomopy.prep.normalize/minus_log.yaml
diff --git a/...mopy/tomopy.prep.normalize/normalize.yaml → ...mopy/tomopy.prep.normalize/normalize.yaml b/...mopy/tomopy.prep.normalize/normalize.yaml → ...mopy/tomopy.prep.normalize/normalize.yaml
diff --git a/...y/tomopy.prep.normalize/normalize_bg.yaml → ...y/tomopy.prep.normalize/normalize_bg.yaml b/...y/tomopy.prep.normalize/normalize_bg.yaml → ...y/tomopy.prep.normalize/normalize_bg.yaml
diff --git a/...y/tomopy.prep.normalize/normalize_nf.yaml → ...y/tomopy.prep.normalize/normalize_nf.yaml b/...y/tomopy.prep.normalize/normalize_nf.yaml → ...y/tomopy.prep.normalize/normalize_nf.yaml
diff --git a/.../tomopy.prep.normalize/normalize_roi.yaml → .../tomopy.prep.normalize/normalize_roi.yaml b/.../tomopy.prep.normalize/normalize_roi.yaml → .../tomopy.prep.normalize/normalize_roi.yaml
diff --git a/...opy/tomopy.prep.phase/retrieve_phase.yaml → ...opy/tomopy.prep.phase/retrieve_phase.yaml b/...opy/tomopy.prep.phase/retrieve_phase.yaml → ...opy/tomopy.prep.phase/retrieve_phase.yaml
diff --git a/...mopy/tomopy.prep.stripe/download_all.yaml → ...mopy/tomopy.prep.stripe/download_all.yaml b/...mopy/tomopy.prep.stripe/download_all.yaml → ...mopy/tomopy.prep.stripe/download_all.yaml
diff --git a/...tomopy.prep.stripe/remove_all_stripe.yaml → ...tomopy.prep.stripe/remove_all_stripe.yaml b/...tomopy.prep.stripe/remove_all_stripe.yaml → ...tomopy.prep.stripe/remove_all_stripe.yaml
diff --git a/...omopy.prep.stripe/remove_dead_stripe.yaml → ...omopy.prep.stripe/remove_dead_stripe.yaml b/...omopy.prep.stripe/remove_dead_stripe.yaml → ...omopy.prep.stripe/remove_dead_stripe.yaml
diff --git a/...mopy.prep.stripe/remove_large_stripe.yaml → ...mopy.prep.stripe/remove_large_stripe.yaml b/...mopy.prep.stripe/remove_large_stripe.yaml → ...mopy.prep.stripe/remove_large_stripe.yaml
diff --git a/...stripe/remove_stripe_based_filtering.yaml → ...stripe/remove_stripe_based_filtering.yaml b/...stripe/remove_stripe_based_filtering.yaml → ...stripe/remove_stripe_based_filtering.yaml
diff --git a/...p.stripe/remove_stripe_based_fitting.yaml → ...p.stripe/remove_stripe_based_fitting.yaml b/...p.stripe/remove_stripe_based_fitting.yaml → ...p.stripe/remove_stripe_based_fitting.yaml
diff --git a/...pe/remove_stripe_based_interpolation.yaml → ...pe/remove_stripe_based_interpolation.yaml b/...pe/remove_stripe_based_interpolation.yaml → ...pe/remove_stripe_based_interpolation.yaml
diff --git a/...p.stripe/remove_stripe_based_sorting.yaml → ...p.stripe/remove_stripe_based_sorting.yaml b/...p.stripe/remove_stripe_based_sorting.yaml → ...p.stripe/remove_stripe_based_sorting.yaml
diff --git a/.../tomopy.prep.stripe/remove_stripe_fw.yaml → .../tomopy.prep.stripe/remove_stripe_fw.yaml b/.../tomopy.prep.stripe/remove_stripe_fw.yaml → .../tomopy.prep.stripe/remove_stripe_fw.yaml
diff --git a/.../tomopy.prep.stripe/remove_stripe_sf.yaml → .../tomopy.prep.stripe/remove_stripe_sf.yaml b/.../tomopy.prep.stripe/remove_stripe_sf.yaml → .../tomopy.prep.stripe/remove_stripe_sf.yaml
diff --git a/.../tomopy.prep.stripe/remove_stripe_ti.yaml → .../tomopy.prep.stripe/remove_stripe_ti.yaml b/.../tomopy.prep.stripe/remove_stripe_ti.yaml → .../tomopy.prep.stripe/remove_stripe_ti.yaml
diff --git a/.../tomopy.prep.stripe/stripes_detect3d.yaml → .../tomopy.prep.stripe/stripes_detect3d.yaml b/.../tomopy.prep.stripe/stripes_detect3d.yaml → .../tomopy.prep.stripe/stripes_detect3d.yaml
diff --git a/...py/tomopy.prep.stripe/stripes_mask3d.yaml → ...py/tomopy.prep.stripe/stripes_mask3d.yaml b/...py/tomopy.prep.stripe/stripes_mask3d.yaml → ...py/tomopy.prep.stripe/stripes_mask3d.yaml
diff --git a/.../tomopy/tomopy.recon.algorithm/recon.yaml → .../tomopy/tomopy.recon.algorithm/recon.yaml b/.../tomopy/tomopy.recon.algorithm/recon.yaml → .../tomopy/tomopy.recon.algorithm/recon.yaml
diff --git a/...y/tomopy.recon.rotation/download_all.yaml → ...y/tomopy.recon.rotation/download_all.yaml b/...y/tomopy.recon.rotation/download_all.yaml → ...y/tomopy.recon.rotation/download_all.yaml
diff --git a/...py/tomopy.recon.rotation/find_center.yaml → ...py/tomopy.recon.rotation/find_center.yaml b/...py/tomopy.recon.rotation/find_center.yaml → ...py/tomopy.recon.rotation/find_center.yaml
diff --git a/...tomopy.recon.rotation/find_center_pc.yaml → ...tomopy.recon.rotation/find_center_pc.yaml b/...tomopy.recon.rotation/find_center_pc.yaml → ...tomopy.recon.rotation/find_center_pc.yaml
diff --git a/...tomopy.recon.rotation/find_center_vo.yaml → ...tomopy.recon.rotation/find_center_vo.yaml b/...tomopy.recon.rotation/find_center_vo.yaml → ...tomopy.recon.rotation/find_center_vo.yaml
diff --git a/...y/tomopy.recon.rotation/write_center.yaml → ...y/tomopy.recon.rotation/write_center.yaml b/...y/tomopy.recon.rotation/write_center.yaml → ...y/tomopy.recon.rotation/write_center.yaml
diff --git a/.../tomopy/tomopy.sim.project/add_drift.yaml → .../tomopy/tomopy.sim.project/add_drift.yaml b/.../tomopy/tomopy.sim.project/add_drift.yaml → .../tomopy/tomopy.sim.project/add_drift.yaml
diff --git a/...mopy.sim.project/add_focal_spot_blur.yaml → ...mopy.sim.project/add_focal_spot_blur.yaml b/...mopy.sim.project/add_focal_spot_blur.yaml → ...mopy.sim.project/add_focal_spot_blur.yaml
diff --git a/...mopy/tomopy.sim.project/add_gaussian.yaml → ...mopy/tomopy.sim.project/add_gaussian.yaml b/...mopy/tomopy.sim.project/add_gaussian.yaml → ...mopy/tomopy.sim.project/add_gaussian.yaml
diff --git a/...omopy/tomopy.sim.project/add_poisson.yaml → ...omopy/tomopy.sim.project/add_poisson.yaml b/...omopy/tomopy.sim.project/add_poisson.yaml → ...omopy/tomopy.sim.project/add_poisson.yaml
diff --git a/.../tomopy/tomopy.sim.project/add_rings.yaml → .../tomopy/tomopy.sim.project/add_rings.yaml b/.../tomopy/tomopy.sim.project/add_rings.yaml → .../tomopy/tomopy.sim.project/add_rings.yaml
diff --git a/...y/tomopy.sim.project/add_salt_pepper.yaml → ...y/tomopy.sim.project/add_salt_pepper.yaml b/...y/tomopy.sim.project/add_salt_pepper.yaml → ...y/tomopy.sim.project/add_salt_pepper.yaml
diff --git a/...omopy/tomopy.sim.project/add_zingers.yaml → ...omopy/tomopy.sim.project/add_zingers.yaml b/...omopy/tomopy.sim.project/add_zingers.yaml → ...omopy/tomopy.sim.project/add_zingers.yaml
diff --git a/...mopy/tomopy.sim.project/download_all.yaml → ...mopy/tomopy.sim.project/download_all.yaml b/...mopy/tomopy.sim.project/download_all.yaml → ...mopy/tomopy.sim.project/download_all.yaml
diff --git a/...es/tomopy/tomopy.sim.project/project.yaml → ...es/tomopy/tomopy.sim.project/project.yaml b/...es/tomopy/tomopy.sim.project/project.yaml → ...es/tomopy/tomopy.sim.project/project.yaml
diff --git a/...s/tomopy/tomopy.sim.project/project2.yaml → ...s/tomopy/tomopy.sim.project/project2.yaml b/...s/tomopy/tomopy.sim.project/project2.yaml → ...s/tomopy/tomopy.sim.project/project2.yaml
diff --git a/...s/tomopy/tomopy.sim.project/project3.yaml → ...s/tomopy/tomopy.sim.project/project3.yaml b/...s/tomopy/tomopy.sim.project/project3.yaml → ...s/tomopy/tomopy.sim.project/project3.yaml
diff --git a/pyproject.toml b/pyproject.toml
@@ -10,32 +10,14 @@ where = ["."]
 include = ["httomo*"]
 
 [tool.setuptools.package-data]
-httomo = ["methods_database/packages/*.yaml",
-          "methods_database/packages/external/*.yaml",
-          "methods_database/packages/external/httomolibgpu/*.yaml",
-          "methods_database/packages/external/httomolib/*.yaml",
-          "methods_database/packages/external/tomopy/*.yaml",
-          "../yaml_templates/httomolib/*/httomolib.misc.corr/*.yaml",
-          "../yaml_templates/httomolib/*/httomolib.misc.images/*.yaml",
-          "../yaml_templates/httomolib/*/httomolib.misc.segm/*.yaml",
-          "../yaml_templates/httomolib/*/httomolib.prep.phase/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.misc.corr/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.misc.morph/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.prep.alignment/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.prep.normalize/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.prep.phase/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.prep.stripe/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.recon.algorithm/*.yaml",
-          "../yaml_templates/httomolibgpu/*/httomolibgpu.recon.rotation/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.misc.corr/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.misc.morph/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.prep.alignment/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.prep.normalize/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.prep.phase/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.prep.stripe/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.recon.algorithm/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.recon.rotation/*.yaml",
-          "../yaml_templates/tomopy/*/tomopy.sim.project/*.yaml"]
+httomo = [
+    "methods_database/packages/*.yaml",
+    "methods_database/packages/external/*.yaml",
+    "methods_database/packages/external/httomolibgpu/*.yaml",
+    "methods_database/packages/external/httomolib/*.yaml",
+    "methods_database/packages/external/tomopy/*.yaml",
+    "yaml_templates/*/*/*.yaml",
+]
 
 [tool.setuptools-git-versioning]
 enabled = true