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diff --git a/.buildinfo b/.buildinfo
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 1ba6b9b472cbdac9eba903c57b75f56e
+tags: 645f666f9bcd5a90fca523b33c5a78b7
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diff --git a/...ttomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase.doctree b/...ttomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase.doctree
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diff --git a/_modules/httomo/runner/auxiliary_data.html b/_modules/httomo/runner/auxiliary_data.html
diff --git a/_modules/httomo/runner/gpu_utils.html b/_modules/httomo/runner/gpu_utils.html
diff --git a/_modules/httomo/runner/methods_repository_interface.html b/_modules/httomo/runner/methods_repository_interface.html
diff --git a/_modules/httomo/runner/monitoring_interface.html b/_modules/httomo/runner/monitoring_interface.html
diff --git a/_modules/httomo/runner/output_ref.html b/_modules/httomo/runner/output_ref.html
diff --git a/_modules/httomo/sweep_runner/param_sweep_yaml_loader.html b/_modules/httomo/sweep_runner/param_sweep_yaml_loader.html
diff --git a/_modules/httomo/utils.html b/_modules/httomo/utils.html
diff --git a/_modules/index.html b/_modules/index.html
diff --git a/_panels_static/panels-bootstrap.5fd3999ee7762ccc51105388f4a9d115.css b/_panels_static/panels-bootstrap.5fd3999ee7762ccc51105388f4a9d115.css
diff --git a/_panels_static/panels-main.c949a650a448cc0ae9fd3441c0e17fb0.css b/_panels_static/panels-main.c949a650a448cc0ae9fd3441c0e17fb0.css
diff --git a/_panels_static/panels-variables.06eb56fa6e07937060861dad626602ad.css b/_panels_static/panels-variables.06eb56fa6e07937060861dad626602ad.css
@@ -0,0 +1,7 @@
+:root {
+--tabs-color-label-active: hsla(231, 99%, 66%, 1);
+--tabs-color-label-inactive: rgba(178, 206, 245, 0.62);
+--tabs-color-overline: rgb(207, 236, 238);
+--tabs-color-underline: rgb(207, 236, 238);
+--tabs-size-label: 1rem;
+}
diff --git a/_sources/api/httomo.base_block.rst b/_sources/api/httomo.base_block.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.base_block`
+============================================
+.. automodule:: httomo.base_block
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.block_interfaces.rst b/_sources/api/httomo.block_interfaces.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.block_interfaces`
+============================================
+.. automodule:: httomo.block_interfaces
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.cli.rst b/_sources/api/httomo.cli.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.cli`
+============================================
+.. automodule:: httomo.cli
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.cli_utils.rst b/_sources/api/httomo.cli_utils.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.cli_utils`
+============================================
+.. automodule:: httomo.cli_utils
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.cufft.rst b/_sources/api/httomo.cufft.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.cufft`
+============================================
+.. automodule:: httomo.cufft
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.darks_flats.rst b/_sources/api/httomo.darks_flats.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.darks_flats`
+============================================
+.. automodule:: httomo.darks_flats
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.dataset_store.rst b/_sources/api/httomo.data.dataset_store.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.data.dataset_store`
+============================================
+.. automodule:: httomo.data.dataset_store
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.hdf.loaders.rst b/_sources/api/httomo.data.hdf.loaders.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.data.hdf.loaders`
+============================================
+.. automodule:: httomo.data.hdf.loaders
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.hdf.rst b/_sources/api/httomo.data.hdf.rst
@@ -0,0 +1,18 @@
+httomo.data.hdf package
+=======================
+
+Submodules
+----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.data.hdf.loaders
+
+Module contents
+---------------
+
+.. automodule:: httomo.data.hdf
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.mpiutil.rst b/_sources/api/httomo.data.mpiutil.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.data.mpiutil`
+============================================
+.. automodule:: httomo.data.mpiutil
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.padding.rst b/_sources/api/httomo.data.padding.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.data.padding`
+============================================
+.. automodule:: httomo.data.padding
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.param_sweep_store.rst b/_sources/api/httomo.data.param_sweep_store.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.data.param_sweep_store`
+============================================
+.. automodule:: httomo.data.param_sweep_store
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.data.rst b/_sources/api/httomo.data.rst
@@ -0,0 +1,29 @@
+httomo.data package
+===================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.data.hdf
+
+Submodules
+----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.data.dataset_store
+   httomo.data.mpiutil
+   httomo.data.padding
+   httomo.data.param_sweep_store
+
+Module contents
+---------------
+
+.. automodule:: httomo.data
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.globals.rst b/_sources/api/httomo.globals.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.globals`
+============================================
+.. automodule:: httomo.globals
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.loaders.rst b/_sources/api/httomo.loaders.rst
@@ -0,0 +1,19 @@
+httomo.loaders package
+======================
+
+Submodules
+----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.loaders.standard_tomo_loader
+   httomo.loaders.types
+
+Module contents
+---------------
+
+.. automodule:: httomo.loaders
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.loaders.standard_tomo_loader.rst b/_sources/api/httomo.loaders.standard_tomo_loader.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.loaders.standard_tomo_loader`
+============================================
+.. automodule:: httomo.loaders.standard_tomo_loader
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.loaders.types.rst b/_sources/api/httomo.loaders.types.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.loaders.types`
+============================================
+.. automodule:: httomo.loaders.types
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.logger.rst b/_sources/api/httomo.logger.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.logger`
+============================================
+.. automodule:: httomo.logger
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.datareducer.rst b/_sources/api/httomo.method_wrappers.datareducer.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.datareducer`
+============================================
+.. automodule:: httomo.method_wrappers.datareducer
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.dezinging.rst b/_sources/api/httomo.method_wrappers.dezinging.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.dezinging`
+============================================
+.. automodule:: httomo.method_wrappers.dezinging
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.generic.rst b/_sources/api/httomo.method_wrappers.generic.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.generic`
+============================================
+.. automodule:: httomo.method_wrappers.generic
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.images.rst b/_sources/api/httomo.method_wrappers.images.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.images`
+============================================
+.. automodule:: httomo.method_wrappers.images
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.reconstruction.rst b/_sources/api/httomo.method_wrappers.reconstruction.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.reconstruction`
+============================================
+.. automodule:: httomo.method_wrappers.reconstruction
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.rotation.rst b/_sources/api/httomo.method_wrappers.rotation.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.rotation`
+============================================
+.. automodule:: httomo.method_wrappers.rotation
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.rst b/_sources/api/httomo.method_wrappers.rst
@@ -0,0 +1,25 @@
+httomo.method\_wrappers package
+===============================
+
+Submodules
+----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.method_wrappers.datareducer
+   httomo.method_wrappers.dezinging
+   httomo.method_wrappers.generic
+   httomo.method_wrappers.images
+   httomo.method_wrappers.reconstruction
+   httomo.method_wrappers.rotation
+   httomo.method_wrappers.save_intermediate
+   httomo.method_wrappers.stats_calc
+
+Module contents
+---------------
+
+.. automodule:: httomo.method_wrappers
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.save_intermediate.rst b/_sources/api/httomo.method_wrappers.save_intermediate.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.save_intermediate`
+============================================
+.. automodule:: httomo.method_wrappers.save_intermediate
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.method_wrappers.stats_calc.rst b/_sources/api/httomo.method_wrappers.stats_calc.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.method_wrappers.stats_calc`
+============================================
+.. automodule:: httomo.method_wrappers.stats_calc
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.methods.rst b/_sources/api/httomo.methods.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.methods`
+============================================
+.. automodule:: httomo.methods
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.methods_database.packages.external.httomolib.rst b/_sources/api/httomo.methods_database.packages.external.httomolib.rst
@@ -0,0 +1,10 @@
+httomo.methods\_database.packages.external.httomolib package
+============================================================
+
+Module contents
+---------------
+
+.. automodule:: httomo.methods_database.packages.external.httomolib
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/api/httomo.methods_database.packages.external.httomolibgpu.rst b/_sources/api/httomo.methods_database.packages.external.httomolibgpu.rst
@@ -0,0 +1,18 @@
+httomo.methods\_database.packages.external.httomolibgpu package
+===============================================================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.methods_database.packages.external.httomolibgpu.supporting_funcs
+
+Module contents
+---------------
+
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/...methods_database.packages.external.httomolibgpu.supporting_funcs.misc.morph.rst b/...methods_database.packages.external.httomolibgpu.supporting_funcs.misc.morph.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.morph`
+============================================
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.morph
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/...thods_database.packages.external.httomolibgpu.supporting_funcs.misc.rescale.rst b/...thods_database.packages.external.httomolibgpu.supporting_funcs.misc.rescale.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.rescale`
+============================================
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.rescale
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/...ttomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.rst b/...ttomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.rst
@@ -0,0 +1,19 @@
+httomo.methods\_database.packages.external.httomolibgpu.supporting\_funcs.misc package
+======================================================================================
+
+Submodules
+----------
+
+.. toctree::
+   :maxdepth: 4
+
+   httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.morph
+   httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc.rescale
+
+Module contents
+---------------
+
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.misc
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/...ods_database.packages.external.httomolibgpu.supporting_funcs.prep.normalize.rst b/...ods_database.packages.external.httomolibgpu.supporting_funcs.prep.normalize.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.normalize`
+============================================
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.normalize
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/...methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase.rst b/...methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase.rst
@@ -0,0 +1,6 @@
+:mod:`httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase`
+============================================
+.. automodule:: httomo.methods_database.packages.external.httomolibgpu.supporting_funcs.prep.phase
+   :members:
+   :undoc-members:
+   :show-inheritance: