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Add devcontainer config
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yousefmoazzam committed Oct 20, 2023
1 parent 835bf19 commit de9ff3f
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12 changes: 12 additions & 0 deletions .devcontainer/Dockerfile
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FROM mambaorg/micromamba:1.5-focal-cuda-11.7.1

USER root

RUN apt update && apt install -y git && apt clean

USER $MAMBA_USER

COPY --chown=$MAMBA_USER:$MAMBA_USER ./environment.yml /home/env.yaml

RUN micromamba install -y -n base -f /home/env.yaml && \
micromamba clean --all --yes
31 changes: 31 additions & 0 deletions .devcontainer/devcontainer.json
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{
"name": "httomo",
"image": "gcr.io/diamond-pubreg/httomo/dev:0.0.1",
"workspaceMount": "src=${localWorkspaceFolder},dst=/httomo,type=bind",
"workspaceFolder": "/httomo",
// Please fill in:
// - `HTTOMOLIB_LOCAL_REPO` and `HTTOMOLIBGPU_LOCAL_REPO` with your local
// git repos of httomolib and httomolibgpu respectively
// - `LOCAL_OUT` with a directory that supports parallel I/O (any directory
// on a local drive will be sufficient)
"mounts": [
"src=HTTOMOLIB_LOCAL_REPO,dst=/httomolib,type=bind",
"src=HTTOMOLIBGPU_LOCAL_REPO,dst=/httomolibgpu,type=bind",
"src=LOCAL_OUT,dst=/httomo/output_dir,type=bind",
],
"containerUser": "root",
"securityOpt": [ "label=disable" ],
"postCreateCommand": "micromamba run -n base pip install -e /httomolib /httomolibgpu /httomo",
"customizations": {
"vscode": {
"extensions": [
"ms-python.python",
"ms-pyright.pyright",
"charliermarsh.ruff",
]
}
},
"settings": {
"python.analysis.typeCheckingMode": "strict",
}
}
22 changes: 22 additions & 0 deletions .devcontainer/environment.yml
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name: httomo
channels:
- astra-toolbox
- conda-forge
- httomo
- anaconda
dependencies:
- astra-toolbox::astra-toolbox
- conda-forge::click>=8.1.3
- conda-forge::cupy
- conda-forge::h5py=*=*mpi_mpich*
- conda-forge::hdf5plugin
- conda-forge::mpi4py
- conda-forge::pyyaml
- conda-forge::numpy<1.24
- conda-forge::nvtx
- conda-forge::python
- conda-forge::plumbum
- anaconda::ipython
- conda-forge::tomopy
- httomo::larix
- httomo::tomobar

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