Publish workflow - fix syntax #2
Workflow file for this run
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| name: unit-tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| test-all: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: '3.10' | |
| send-coverage: true | |
| pytest-args: --cov=pydicom --cov-append | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| python -m pip install --upgrade pip | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: pip cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: py${{ matrix.python-version }}-${{ matrix.os }}-pip | |
| - name: Cache pydicom test data | |
| id: cache-testdata | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.HOME }}/.pydicom | |
| key: pydicom-testdata | |
| - name: Initial test environment setup | |
| run: | | |
| python -m pip install --editable . | |
| python -m pip install --upgrade wheel pytest pytest-cov | |
| # Core library tests | |
| - name: Test core library | |
| run: | | |
| pytest ${{ matrix.pytest-args }} | |
| - name: Test external sources using pydicom-data | |
| run: | | |
| python -m pip install git+https://github.com/pydicom/pydicom-data | |
| pytest ${{ matrix.pytest-args}} pydicom/tests/test_data_manager.py | |
| # Pixel data tests | |
| - name: Install and test with numpy | |
| run: | | |
| python -m pip install --upgrade numpy | |
| pytest ${{ matrix.pytest-args }} | |
| - name: Install and test Pillow | |
| run: | | |
| python -m pip install --upgrade pillow | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_pillow_pixel_data.py | |
| python -m pip uninstall -y pillow | |
| - name: Install and test jpeg_ls | |
| run: | | |
| python -m pip install pyjpegls | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_jpeg_ls_pixel_data.py pydicom/tests/test_JPEG_LS_transfer_syntax.py | |
| python -m pip uninstall -y pyjpegls | |
| - name: Install and test GDCM | |
| run: | | |
| python -m pip install python-gdcm | |
| python -c 'import gdcm; print(gdcm.GDCM_VERSION)' | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_gdcm_pixel_data.py | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_encoders_gdcm.py | |
| python -m pip uninstall -y python-gdcm | |
| - name: Install and test pylibjpeg | |
| run: | | |
| python -m pip install pylibjpeg | |
| python -m pip uninstall -y pylibjpeg-openjpeg pylibjpeg-rle | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_pylibjpeg.py | |
| python -m pip install pylibjpeg-openjpeg pylibjpeg-libjpeg pylibjpeg-rle | |
| pytest ${{ matrix.pytest-args }} pydicom/tests/test_pylibjpeg.py | |
| - name: Test all pixel handling | |
| run: | | |
| python -m pip install pillow python-gdcm pyjpegls | |
| pytest ${{ matrix.pytest-args }} | |
| - name: Send coverage results | |
| if: ${{ success() && matrix.send-coverage }} | |
| uses: codecov/codecov-action@v3 |