Addressing issue #123

This was deleting accidentally in a previous commit.

testing.sagebrush.master/Stepwat_Inputs/Input/sxw/Input/outsetup_v30.in

@@ -1,5 +1,64 @@
-TRANSP  SUM  MO  1  end  transp
-PRECIP  SUM  YR  1  end  precip
-TEMP    AVG  YR  1  end  temp
-AET     SUM  YR  1  end  aet
-SWCBULK     FIN  MO  1  end  swc_bulk
+# Output setup file for SOILWAT2
+#
+# Notes:
+# Time periods available:  DY,WK,MO,YR
+#   eg, if DY is chosen then 100,200 would mean to use the second hundred days
+#   But if YR is chosen, start and end numbers are in days so only those days
+#   are reported for the yearly average.
+# Some keys from older versions (fortran and the c versions mimicking the fortran
+#   version) are not currently implemented:
+#   ALLH20, WTHR.
+#
+# ESTABL only produces yearly output, namely, DOY for each species requested.
+#   Thus, to minimize typo errors, all flags are ignored except the filename.
+#   Output is simply the day of the year establishment occurred for each species
+#   in each year of the model run.  Refer to the estabs.in file for more info.
+#
+# DEEPSWC produces output only if the deepdrain flag is set in siteparam.in.
+#
+# Filename prefixes should not have a file extension.
+# Case is unimportant.
+#
+# SUMTYPEs are one of the following:
+#  OFF - no output for this variable
+#  SUM - sum the variable for each day in the output period
+#  AVG - average the variable over the output period
+#  FIN - output value of final day in the period; soil water variables only.
+# Note that SUM and AVG are the same if timeperiod = dy.
+#
+# (01/17/2013) TIMESTEP key indicates which periods you want to output.
+# You can output all the periods at a time, just one, or however many
+# you want. To change which periods to output type 'dy' for day,
+# 'wk' for week, 'mo' for month, and 'yr' for year after TIMESTEP
+# in any order. For example: 'TIMESTEP mo wk' will output for month and week
+
+TIMESTEP dy yr # must be lowercase
+
+#      key     SUMTYPE   PERIOD   start    end    filename_prefix   comment
+         TEMP     AVG       YR       1     end        temp_air      /* max., min, average temperature (C) */
+       PRECIP     SUM       YR       1     end          precip      /* total precip = sum(rain, snow), rain, snow-fall, snowmelt, and snowloss (cm) */
+   SOILINFILT     SUM       YR       1     end    infiltration      /* water to infiltrate in top soil layer (cm), runoff (cm); (not-intercepted rain)+(snowmelt-runoff) */
+       RUNOFF     SUM       YR       1     end          runoff      /* runoff/runon (cm): net runoff, runoff from ponded water, runoff from snowmelt, runon of surface water from hypothetical upslope neighbor */
+      VWCBULK     AVG       YR       1     end        vwc_bulk      /* bulk volumetric soilwater (cm / layer) */
+    VWCMATRIC     AVG       YR       1     end      vwc_matric      /* matric volumetric soilwater (cm / layer) */
+      SWCBULK     AVG       YR       1     end        swc_bulk      /* bulk soilwater content (cm / cm layer); swc.l1(today) = swc.l1(yesterday)+inf_soil-lyrdrain.l1-transp.l1-evap_soil.l1; swc.li(today) = swc.li(yesterday)+lyrdrain.l(i-1)-lyrdrain.li-transp.li-evap_soil.li; swc.llast(today) = swc.llast(yesterday)+lyrdrain.l(last-1)-deepswc-transp.llast-evap_soil.llast */
+	  SWA  	  	  AVG  	    YR       1     end        swa			/* plant available soil water (cm / layer): trees, shrubs, forbs, grasses */
+      SWABULK     AVG       YR       1     end        swa_bulk      /* DEFUNCT: MAY BE REMOVED IN FUTURE VERSIONS; bulk available soil water (cm/layer) = swc - wilting point */
+    SWAMATRIC     AVG       YR       1     end      swa_matric      /* DEFUNCT: MAY BE REMOVED IN FUTURE VERSIONS; matric available soil water (cm/layer) = swc - wilting point */
+    SWPMATRIC     AVG       YR       1     end      swp_matric      /* matric soilwater potential (-bars) */
+ SURFACEWATER     AVG       YR       1     end   surface_water      /* surface water (cm) */
+       TRANSP     SUM       YR       1     end          transp      /* transpiration from each soil layer (cm): total, trees, shrubs, forbs, grasses */
+     EVAPSOIL     SUM       YR       1     end       evap_soil      /* bare-soil evaporation from each soil layer (cm) */
+  EVAPSURFACE     SUM       YR       1     end    evap_surface      /* evaporation (cm): total, trees, shrubs, forbs, grasses, litter, surface water */
+ INTERCEPTION     SUM       YR       1     end    interception      /* intercepted rain (cm): total, trees, shrubs, forbs, grasses, and litter (cm) */
+     LYRDRAIN     SUM       YR       1     end     percolation      /* water percolated from each layer (cm) */
+       HYDRED     SUM       YR       1     end          hydred      /* hydraulic redistribution from each layer (cm): total, trees, shrubs, forbs, grasses */
+          AET     SUM       YR       1     end             aet      /* actual evapotr. (cm) */
+          PET     SUM       YR       1     end             pet      /* potential evaptr (cm) */
+       WETDAY     SUM       YR       1     end         wetdays      /* days above swc_wet */
+     SNOWPACK     AVG       YR       1     end        snowpack      /* snowpack water equivalent (cm), snowdepth (cm); since snowpack is already summed, use avg - sum sums the sums = nonsense */
+      DEEPSWC     SUM       YR       1     end      deep_drain      /* deep drainage into lowest layer (cm) */
+     SOILTEMP     AVG       YR       1     end       temp_soil      /* soil temperature from each soil layer (in celsius) */
+       ESTABL     OFF       YR       1     end          estabs      /* yearly establishment results */
+   CO2EFFECTS     AVG       YR       1     end      vegetation      /* vegetation biomass: biomass (g/m2) for grasses, shrubs, trees, forbs, and total; live biomass (g/m2) fgrasses, shrubs, trees, forbs, and total; biomass CO2-effect (multiplier) for grasses, shrubs, trees, and forbs; WUE CO2-effect (multiplier) for grasses, shrubs, trees, and forbs
+