Add installer

.gitignore

@@ -1,6 +1,7 @@
 # Distribution / packaging
 .Python
 env/
+venv/
 build/
 develop-eggs/
 dist/
@@ -27,4 +28,4 @@ generic_uploader/__pycache__/
 *.spec
 
 # other stuff:
-*.log
+*.log

bids_manager.desktop

@@ -0,0 +1,7 @@
+[Desktop Entry]
+Type=Application
+Name=BIDSManager
+Icon=/usr/local/share/icons/bids_manager.ico
+Exec=bids_manager
+Terminal=false
+Categories=Utility;Science;MedicalSoftware;

bids_manager/__init__.py

@@ -0,0 +1,4 @@
+from .bids_manager import *
+
+def main():
+    run_app()

bids_manager.py → bids_manager/bids_manager.py

@@ -34,7 +34,7 @@
 from builtins import str
 from builtins import object
 from future import standard_library
-import ins_bids_class as bids
+import bids_manager.ins_bids_class as bids
 import os
 import platform
 from generic_uploader.generic_uploader import call_generic_uplader
@@ -57,7 +57,7 @@ class BidsManager(Frame, object):  # !!!!!!!!!! object is used to make the class
     bids_startfile = ''
     import_startfile = ''
 
-    def __init__(self, monitor_width, monitor_height):
+    def __init__(self, root, monitor_width, monitor_height):
         super().__init__()
         self.monitor_width = monitor_width
         self.monitor_height = monitor_height
@@ -3305,7 +3305,7 @@ def make_splash():
     return splash + ['Version ' + BidsManager.version]
 
 
-if __name__ == '__main__':
+def run_app():
     from time import sleep
 
     splsh = make_splash()
@@ -3323,7 +3323,7 @@ def make_splash():
     width = root.winfo_screenwidth()
     height = root.winfo_screenheight()
     root.option_add("*Font", "10")
-    my_gui = BidsManager(width, height)
+    my_gui = BidsManager(root, width, height)
     root.protocol("WM_DELETE_WINDOW", my_gui.close_window)
     if not bids.BidsBrick.curr_user.lower() == 'jegou':
         if platform.system() == 'Windows':
@@ -3337,3 +3337,6 @@ def make_splash():
     # root.update()
     # root.deiconify()
     root.mainloop()
+
+if __name__ == '__main__':
+    run_app()   

ins_bids_class.py → bids_manager/ins_bids_class.py

@@ -37,7 +37,7 @@
 from sys import argv, modules, exc_info
 #from sys import modules
 import json
-import brainvision_hdr as bv_hdr
+import bids_manager.brainvision_hdr as bv_hdr
 from datetime import datetime
 import pprint
 import gzip

generic_uploader/__init__.py

@@ -0,0 +1 @@
+from generic_uploader import *

generic_uploader/generic_uploader.py

@@ -40,7 +40,7 @@
 from generic_uploader.anonymizeDicom import anonymize as anonymize_dcm
 # import pysftp
 # import paramiko
-import ins_bids_class
+import bids_manager.ins_bids_class
 from generic_uploader import patient_requirements_class
 from generic_uploader.modality_gui import ModalityGui
 from generic_uploader.import_by_modality import import_by_modality

generic_uploader/import_by_modality.py

@@ -22,7 +22,7 @@
 
 from PyQt5 import QtWidgets
 import os
-import ins_bids_class
+import bids_manager.ins_bids_class
 from generic_uploader.meg_import_dialog import MegImportDialog
 
 

setup.py

@@ -0,0 +1,36 @@
+from setuptools import setup, find_packages
+from os import path
+
+here = path.abspath(path.dirname(__file__))
+
+setup(
+    name='bids-manager',
+    version='0.2.5',
+    zip_safe=False,
+    url='https://github.com/LREN-CHUV/data-tracking',
+    description='Extract meta-data from DICOM and NIFTI files',
+    author='Roehri',
+    license='GPL 3.0',
+    packages=find_packages(),
+    keywords='bids mri dicom nifti eeg ieeg',
+    install_requires=[
+        'QtPy',
+        'pydicom',
+        'future',
+    ],
+    include_package_data=True,
+    data_files = [
+        ('share/applications', ['bids_manager.desktop']),
+        ('share/icons', ['bids_manager.ico']),
+        ('.', ['Tutorial_BIDS_Manager.pdf']),
+    ],
+    entry_points={'console_scripts': ['bids_manager=bids_manager:main']},
+    classifiers=(
+        'Intended Audience :: Developers',
+        'Intended Audience :: Science/Research',
+        'Operating System :: Unix',
+        'License :: OSI Approved :: Gnu General Public License 3.0',
+        'Topic :: Scientific/Engineering :: Bio-Informatics',
+        'Programming Language :: Python :: 3 :: Only',
+    )
+)