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Fix how IOP reads time #2917

Merged
merged 1 commit into from
Jul 26, 2024
Merged

Fix how IOP reads time #2917

merged 1 commit into from
Jul 26, 2024

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tcclevenger
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@tcclevenger tcclevenger commented Jul 22, 2024 •
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Basically, if time is unlimited, you cannot read the time array all at once using read_var(). Fix: treat time as unlimited and then read each time index in sequence using time_idx input for read_vars().

@tcclevenger tcclevenger self-assigned this Jul 22, 2024
@tcclevenger tcclevenger added AT: RETEST Force the autotester (AT) to retest the PR AT: AUTOMERGE Inform the autotester (AT) that it can merge this PR if reviewers approved, and tests pass and removed AT: AUTOMERGE Inform the autotester (AT) that it can merge this PR if reviewers approved, and tests pass labels Jul 23, 2024
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bartgol commented Jul 25, 2024 •
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We also have the routine get_all_times, if that helps...

Edit: although, this only work if the time dimension is unlimited. But you can first check that with is_dim_unlimited, or maybe call pretend_dim_is_unlimited before calling get_all_times...

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Starting SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
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Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci with 16 procs
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Starting RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 1.075429 seconds (PEND). [COMPLETED 4 of 9]
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Starting RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 1.540932 seconds (PEND). [COMPLETED 7 of 9]
Finished MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 606.266380 seconds (PASS)
Starting RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 1.260919 seconds (PEND). [COMPLETED 8 of 9]
Finished MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 710.101607 seconds (PASS)
Starting RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 1.331565 seconds (PEND). [COMPLETED 9 of 9]
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PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics.C.20240725_080351_xx2jk8
PASS SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3.C.20240725_080351_xx2jk8
test-scheduler took 1012.2055418491364 seconds'
+ [[ 0 != 0 ]]
+ set +x
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 78665 killed;
[ssh-agent] Stopped.
Performing Post build task...
Match found for : : True
Logical operation result is TRUE
Running script  : #!/bin/bash -le

cd $WORKSPACE/${BUILD_ID}/


./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh


We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs


squeue -o"%.7i %u %40j" | grep e3sm-jenkins | grep test-launcher | awk '{ print $1 }' | xargs -r scancel


[SCREAM_PullRequest_Autotester_Mappy] $ /bin/bash -le /tmp/jenkins10754303324284743067.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Finished: SUCCESS
SCREAM_PullRequest_Autotester_Weaver # 5934 FAILED (click to see last 100 lines of console output) 

CMake Error at /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/ctest_script.cmake:76 (message):
  Test had fails

===============================================================================

Testing '''7185f37d57ce84c379439feb435f2872ad37a411''' for test '''full_sp_debug'''


RUN: taskset -c 52-103 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_sp_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_sp_debug -DBUILD_NAME_MOD=full_sp_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DSCREAM_DOUBLE_PRECISION=False -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_sp_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_sp_debug


Testing '''7185f37d57ce84c379439feb435f2872ad37a411''' for test '''release'''


RUN: taskset -c 104-155 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/release/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/release -DBUILD_NAME_MOD=release -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Release -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/release" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/release


Testing '''7185f37d57ce84c379439feb435f2872ad37a411''' for test '''full_debug'''


RUN: taskset -c 0-51 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_debug -DBUILD_NAME_MOD=full_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DKokkos_ENABLE_DEBUG_BOUNDS_CHECK=True -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx/ctest-build/full_debug

Build type full_debug failed at testing time. Here'''s a list of failed tests:

108:mam4_aci_standalone_baseline_cmp


Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx

weaver failed'


    

  • errors='Build type full_debug failed at testing time. Here'''s a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx

weaver failed'


    

  • SA_FAILURES_DETAILS+='Build type full_debug failed at testing time. Here'''s a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx

weaver failed'


    

  • [[ 1 == 0 ]]
    • 

  • [[ weaver == \m\a\p\p\y ]]
    • 

  • set +x
    
######################################################
    
FAILS DETECTED:
    
SCREAM STANDALONE TESTING FAILED!
    
Build type full_debug failed at testing time. Here's a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here's a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here's a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5934/scream/components/eamxx

weaver failed

######################################################

Build step 'Execute shell' marked build as failure

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash -le


cd $WORKSPACE/${BUILD_ID}/


./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh

[SCREAM_PullRequest_Autotester_Weaver] $ /bin/bash -le /tmp/jenkins18341986421449671230.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: [email protected]

Finished: FAILURE

@tcclevenger
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We also have the routine get_all_times, if that helps...

Edit: although, this only work if the time dimension is unlimited. But you can first check that with is_dim_unlimited, or maybe call pretend_dim_is_unlimited before calling get_all_times...

Yeah, I thought about get_all_times but that only works if the time dimension is the same name as the time variable. In IOP files the time variable is named tsec and the time dimension could be tsec or time.

We could have a change_var_name function, but that is probably overkill for just this situation.

@bartgol
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bartgol commented Jul 25, 2024

We also have the routine get_all_times, if that helps...
Edit: although, this only work if the time dimension is unlimited. But you can first check that with is_dim_unlimited, or maybe call pretend_dim_is_unlimited before calling get_all_times...

Yeah, I thought about get_all_times but that only works if the time dimension is the same name as the time variable. In IOP files the time variable is named tsec and the time dimension could be tsec or time.

We could have a change_var_name function, but that is probably overkill for just this situation.

Ah, now I see the issue. Thanks!

@bogensch
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thanks @tcclevenger; I verified that this PR solves the issues I was seeing in many cases.

@tcclevenger tcclevenger added the AT: RETEST Force the autotester (AT) to retest the PR label Jul 25, 2024
@E3SM-Autotester
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Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

@E3SM-Autotester
Copy link
Collaborator

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

  • Build Num: 5701
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA ee77966
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA 02dab76
TEST_REPO_ALIAS SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

  • Build Num: 5936
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA ee77966
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA 02dab76
TEST_REPO_ALIAS SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)
  • Branch: tcclevenger/iop_file_read
  • SHA: ee77966
  • Mode: TEST_REPO

Pull Request Author: tcclevenger

@E3SM-Autotester
Copy link
Collaborator

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

  • Build Num: 5701
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA ee77966
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA 02dab76
TEST_REPO_ALIAS SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

  • Build Num: 5936
  • Status: FAILED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA ee77966
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA 02dab76
TEST_REPO_ALIAS SCREAM
SCREAM_PullRequest_Autotester_Mappy # 5701 PASSED (click to see last 100 lines of console output) 

Starting SHAREDLIB_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 1 procs
Finished SETUP for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 2.569761 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 procs
Finished SETUP for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 2.080169 seconds (PASS)
Finished SETUP for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.600114 seconds (PASS)
Finished SETUP for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 2.598767 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 procs
Starting SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Starting SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 procs
Finished SETUP for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 2.591495 seconds (PASS)
Starting SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 56.431996 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 16 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 55.719083 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci with 16 procs
Finished SHAREDLIB_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 55.499278 seconds (PASS)
Starting MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 55.719253 seconds (PASS)
Starting MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 16 procs
Finished SHAREDLIB_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 74.974122 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 72.698921 seconds (PASS)
Finished SHAREDLIB_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 95.286831 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 189.191783 seconds (PASS)
Finished SHAREDLIB_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 210.182138 seconds (PASS)
Starting MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 203.475706 seconds (PASS)
Starting RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 with 1 proc on interactive node and 64 procs on compute nodes
Finished MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 204.495865 seconds (PASS)
Starting RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 in 1.015290 seconds (PEND). [COMPLETED 1 of 9]
Finished RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics in 1.019967 seconds (PEND). [COMPLETED 2 of 9]
Starting MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Starting MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 16 procs
Finished MODEL_BUILD for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 205.934766 seconds (PASS)
Starting RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci in 0.954953 seconds (PEND). [COMPLETED 3 of 9]
Starting MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 16 procs
Finished MODEL_BUILD for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 208.828373 seconds (PASS)
Starting RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 in 1.030945 seconds (PEND). [COMPLETED 4 of 9]
Starting MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 16 procs
Finished MODEL_BUILD for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 417.905493 seconds (PASS)
Starting RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 in 0.911377 seconds (PEND). [COMPLETED 5 of 9]
Finished MODEL_BUILD for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 450.560184 seconds (PASS)
Starting RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu with 1 proc on interactive node and 16 procs on compute nodes
Finished RUN for test ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu in 4.174222 seconds (PEND). [COMPLETED 6 of 9]
Finished MODEL_BUILD for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 506.361000 seconds (PASS)
Starting RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 1.129428 seconds (PEND). [COMPLETED 7 of 9]
Finished MODEL_BUILD for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 602.920046 seconds (PASS)
Starting RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 in 1.800303 seconds (PEND). [COMPLETED 8 of 9]
Finished MODEL_BUILD for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 713.812694 seconds (PASS)
Starting RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 with 1 proc on interactive node and 64 procs on compute nodes
Finished RUN for test ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 in 1.520829 seconds (PEND). [COMPLETED 9 of 9]
Waiting for tests to finish
PASS ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_D_Lh4.ne4_ne4.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240725_105903_l6ftdx
PASS ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERP_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-4.C.20240725_105903_l6ftdx
PASS ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_D_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-rad_frequency_2--scream-output-preset-5.C.20240725_105903_l6ftdx
PASS ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.mappy_gnu.scream-output-preset-2.C.20240725_105903_l6ftdx
PASS ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/ERS_P16_Ln22.ne30_ne30.F2010-SCREAMv1-DP-DYCOMSrf01.mappy_gnu.C.20240725_105903_l6ftdx
PASS PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/PET_Ln9_P32x2.ne4pg2_ne4pg2.F2010-SCREAMv1.mappy_gnu.scream-output-preset-1.C.20240725_105903_l6ftdx
PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-aci.C.20240725_105903_l6ftdx
PASS SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.mappy_gnu.scream-mam4xx-optics.C.20240725_105903_l6ftdx
PASS SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3 RUN
    Case dir: /ascldap/users/e3sm-jenkins/acme/scratch/SMS_D_Ln9.ne4_ne4.F2010-SCREAMv1-noAero.mappy_gnu.scream-output-preset-3.C.20240725_105903_l6ftdx
test-scheduler took 1020.0504682064056 seconds'
+ [[ 0 != 0 ]]
+ set +x
$ ssh-agent -k
unset SSH_AUTH_SOCK;
unset SSH_AGENT_PID;
echo Agent pid 97573 killed;
[ssh-agent] Stopped.
Performing Post build task...
Match found for : : True
Logical operation result is TRUE
Running script  : #!/bin/bash -le

cd $WORKSPACE/${BUILD_ID}/


./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh


We're having issues with some test-launcher job hanging forever. So let's make sure we clean all penting test-launcher jobs


squeue -o"%.7i %u %40j" | grep e3sm-jenkins | grep test-launcher | awk '{ print $1 }' | xargs -r scancel


[SCREAM_PullRequest_Autotester_Mappy] $ /bin/bash -le /tmp/jenkins17525373721086086400.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: [email protected]

Finished: SUCCESS
SCREAM_PullRequest_Autotester_Weaver # 5936 FAILED (click to see last 100 lines of console output) 

CMake Error at /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/ctest_script.cmake:76 (message):
  Test had fails

===============================================================================

Testing '''0e380ff00572fd00838c590b920b8cbd65ef23ed''' for test '''full_sp_debug'''


RUN: taskset -c 52-103 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_sp_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_sp_debug -DBUILD_NAME_MOD=full_sp_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DSCREAM_DOUBLE_PRECISION=False -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_sp_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_sp_debug


Testing '''0e380ff00572fd00838c590b920b8cbd65ef23ed''' for test '''release'''


RUN: taskset -c 104-155 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/release/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/release -DBUILD_NAME_MOD=release -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Release -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/release" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/release


Testing '''0e380ff00572fd00838c590b920b8cbd65ef23ed''' for test '''full_debug'''


RUN: taskset -c 0-51 sh -c '''SCREAM_BUILD_PARALLEL_LEVEL=52 CTEST_PARALLEL_LEVEL=1 ctest -V --output-on-failure --resource-spec-file /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_debug/ctest_resource_file.json -DNO_SUBMIT=True -DBUILD_WORK_DIR=/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_debug -DBUILD_NAME_MOD=full_debug -S /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/ctest_script.cmake -DCTEST_SITE=weaver -DCMAKE_COMMAND="-C /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/cmake/machine-files/weaver.cmake -DNetCDF_Fortran_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-fortran/4.6.1/gcc/11.3.0/openmpi/4.1.6/5tv5psl -DNetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/netcdf-c/4.9.2/gcc/11.3.0/openmpi/4.1.6/pyuuqd3 -DPnetCDF_C_PATH=/projects/ppc64le-pwr9-rhel8/tpls/parallel-netcdf/1.12.3/gcc/11.3.0/openmpi/4.1.6/2s52shy -DCMAKE_BUILD_TYPE=Debug -DEKAT_DEFAULT_BFB=True -DKokkos_ENABLE_DEBUG_BOUNDS_CHECK=True -DEKAT_DISABLE_TPL_WARNINGS='''''''''ON''''''''' -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpifort -DSCREAM_DYNAMICS_DYCORE=HOMME -DSCREAM_TEST_MAX_TOTAL_THREADS=1 -DSCREAM_BASELINES_DIR=/home/projects/e3sm/scream/pr-autotester/master-baselines/weaver/full_debug" '''

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx/ctest-build/full_debug

Build type full_debug failed at testing time. Here'''s a list of failed tests:

108:mam4_aci_standalone_baseline_cmp


Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx

weaver failed'


    

  • errors='Build type full_debug failed at testing time. Here'''s a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx

weaver failed'


    

  • SA_FAILURES_DETAILS+='Build type full_debug failed at testing time. Here'''s a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here'''s a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here'''s a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx

weaver failed'


    

  • [[ 1 == 0 ]]
    • 

  • [[ weaver == \m\a\p\p\y ]]
    • 

  • set +x
    
######################################################
    
FAILS DETECTED:
    
SCREAM STANDALONE TESTING FAILED!
    
Build type full_debug failed at testing time. Here's a list of failed tests:
    
108:mam4_aci_standalone_baseline_cmp
    • 



Build type full_sp_debug failed at testing time. Here's a list of failed tests:

93:mam4_aci_standalone_baseline_cmp


Build type release failed at testing time. Here's a list of failed tests:

107:mam4_aci_standalone_baseline_cmp


Error(s) occurred during test phase

OVERALL STATUS: FAIL

Starting analysis on weaver with cmd: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

RUN: cd /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx && source /etc/profile.d/modules.sh && module purge && module load cmake/3.25.1 git/2.39.1 python/3.10.8 py-netcdf4/1.5.8 gcc/11.3.0 cuda/11.8.0 openmpi netcdf-c netcdf-fortran parallel-netcdf netlib-lapack && export HDF5_USE_FILE_LOCKING=FALSE && true && bsub -I -q rhel8 -n 4 -gpu num=4 ./scripts/test-all-scream --baseline-dir AUTO $compiler -p -c EKAT_DISABLE_TPL_WARNINGS=ON -m weaver

FROM: /home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/5936/scream/components/eamxx

weaver failed

######################################################

Build step 'Execute shell' marked build as failure

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash -le


cd $WORKSPACE/${BUILD_ID}/


./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh

[SCREAM_PullRequest_Autotester_Weaver] $ /bin/bash -le /tmp/jenkins18221928773897142295.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: [email protected]

Finished: FAILURE

@E3SM-Autotester E3SM-Autotester removed the AT: RETEST Force the autotester (AT) to retest the PR label Jul 25, 2024
@AaronDonahue
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this is failing on weaver for the aci standalone baseline test. I don't think anything about this PR would make us think it impacted ACI. Should we rebase the branch and see if the fail goes away?

@tcclevenger
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this is failing on weaver for the aci standalone baseline test. I don't think anything about this PR would make us think it impacted ACI. Should we rebase the branch and see if the fail goes away?

I can.

@tcclevenger tcclevenger added the AT: RETEST Force the autotester (AT) to retest the PR label Jul 25, 2024
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Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

@E3SM-Autotester
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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

  • Build Num: 5707
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA e5845ea
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA a1b89eb
TEST_REPO_ALIAS SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

  • Build Num: 5942
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA e5845ea
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA a1b89eb
TEST_REPO_ALIAS SCREAM

Using Repos:

Repo: SCREAM (E3SM-Project/scream)
  • Branch: tcclevenger/iop_file_read
  • SHA: e5845ea
  • Mode: TEST_REPO

Pull Request Author: tcclevenger

@E3SM-Autotester
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Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

  • Build Num: 5707
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA e5845ea
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA a1b89eb
TEST_REPO_ALIAS SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

  • Build Num: 5942
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
PR_LABELS BFB;AT: RETEST;bugfix;DP-SCREAM
PULLREQUESTNUM 2917
SCREAM_SOURCE_REPO https://github.com/E3SM-Project/scream
SCREAM_SOURCE_SHA e5845ea
SCREAM_TARGET_BRANCH master
SCREAM_TARGET_REPO https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA a1b89eb
TEST_REPO_ALIAS SCREAM

@E3SM-Autotester E3SM-Autotester removed the AT: RETEST Force the autotester (AT) to retest the PR label Jul 26, 2024
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Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

@tcclevenger tcclevenger added the AT: AUTOMERGE Inform the autotester (AT) that it can merge this PR if reviewers approved, and tests pass label Jul 26, 2024
@E3SM-Autotester E3SM-Autotester merged commit 5658827 into master Jul 26, 2024
14 checks passed
@E3SM-Autotester E3SM-Autotester removed the AT: AUTOMERGE Inform the autotester (AT) that it can merge this PR if reviewers approved, and tests pass label Jul 26, 2024
@E3SM-Autotester E3SM-Autotester deleted the tcclevenger/iop_file_read branch July 26, 2024 06:10
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@bartgol bartgol bartgol approved these changes

@bogensch bogensch bogensch approved these changes

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@tcclevenger tcclevenger

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@tcclevenger @E3SM-Autotester @bartgol @bogensch @AaronDonahue