Merge pull request #2224 from EBISPOT/3.66.0

EFO Release 3.66.0
EBISPOT · May 15, 2024 · ae603c1 · ae603c1
2 parents 5fd1311 + c3bd3ca
commit ae603c1
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diff --git a/ExFactor Ontology release notes.txt b/ExFactor Ontology release notes.txt
diff --git a/efo-base.owl b/efo-base.owl
@@ -16,7 +16,7 @@
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:patterns="http://www.co-ode.org/patterns#">
     <owl:Ontology rdf:about="http://www.ebi.ac.uk/efo/efo-base.owl">
-        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.65.0/efo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.66.0/efo-base.owl"/>
         <obo:format-version>1.4</obo:format-version>
         <dc:creator>Catherine Leroy</dc:creator>
         <dc:creator>Dani Welter</dc:creator>
@@ -41,8 +41,8 @@
 Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the
 License. </dc:rights>
         <terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
-        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-05-14</rdfs:comment>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.65.0</owl:versionInfo>
+        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-05-15</rdfs:comment>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.66.0</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -187134,7 +187134,7 @@ New Label : Moyamoya disease</efo:reason_for_obsolescence>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004251"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>myeloproliferative neoplasm, chronic</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/chronic</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/chronic</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004251"/>
@@ -214023,7 +214023,7 @@ Small-inducible cytokine A11.
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005220"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>lung NET</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005220"/>
@@ -214049,13 +214049,13 @@ Small-inducible cytokine A11.
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>lung neuroendocrine tumor</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/location</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005220"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>lung neuroendocrine tumor, well differentiated, low or intermediate grade</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005220"/>
@@ -214067,7 +214067,7 @@ Small-inducible cytokine A11.
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0005220"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>neuroendocrine neoplasm of lung</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C5670</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -694263,7 +694263,7 @@ Label: Moebius syndrome</efo:reason_for_obsolescence>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>pulmonary sulcus neoplasm, malignant</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
@@ -741363,7 +741363,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
         <oboInOwl:hasDbXref>SCTID:127225006</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>UMLS:C0023480</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">icd11.foundation:2073226578</oboInOwl:hasDbXref>
-        <oboInOwl:hasExactSynonym>CMML</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chronic myelomonocytic leukaemia (CMML)</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym>chronic myelomonocytic leukemia</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym>chronic myelomonocytic leukemia (CMML)</oboInOwl:hasExactSynonym>
@@ -741523,7 +741523,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001779"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget>CMML</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3178</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:607785</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orphanet:98823</oboInOwl:hasDbXref>
@@ -741532,7 +741532,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001779"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget>CMML</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3178</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orphanet:98823</oboInOwl:hasDbXref>
         <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/mondo#ABBREVIATION"/>
@@ -745527,7 +745527,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001853"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>neoplasm of submandibular gland</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3393</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -745558,7 +745558,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001853"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>submandibular gland tumor</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3393</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -745571,7 +745571,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001853"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>tumor of submandibular gland</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neoplasm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3393</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -750241,7 +750241,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>neuroendocrine neoplasm of small intestine</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:design_pattern</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
@@ -750271,7 +750271,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>small intestine NET</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
@@ -750297,13 +750297,13 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>small intestine neuroendocrine tumor</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:4434</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget>small intestine neuroendocrine tumor, well differentiated, low or intermediate grade</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
@@ -750327,7 +750327,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
         <owl:annotatedTarget>small intestine neuroendocrine tumor, well differentiated, low or intermediate grade</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>MONDO:patterns/neuroendocrine_neoplasm</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001928"/>