Skip to content

Commit

Permalink
Added replacement imports for obsoleted Mondo terms that did not have…
Browse files Browse the repository at this point in the history 
… a replacement for #2227
  • Loading branch information
@zoependlington
zoependlington committed Aug 8, 2024
1 parent bca4e03 commit d840cff
Show file tree
Hide file tree
Showing 8 changed files with 16,739 additions and 16,717 deletions.
12 changes: 12 additions & 0 deletions src/ontology/components/mondo_efo_import.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -12868,6 +12868,7 @@ Declaration(Class(obo:MONDO_0956989))
Declaration(Class(obo:MONDO_0957018))
Declaration(Class(obo:MONDO_0957048))
Declaration(Class(obo:MONDO_0957097))
Declaration(Class(obo:MONDO_0957196))
Declaration(Class(obo:MONDO_0957204))
Declaration(Class(obo:MONDO_0957208))
Declaration(Class(obo:MONDO_0957211))
Expand Down Expand Up @@ -350481,6 +350482,17 @@ AnnotationAssertion(skos:exactMatch obo:MONDO_0957097 <https://omim.org/phenotyp
SubClassOf(Annotation(oboInOwl:source "OMIMPS:235400") obo:MONDO_0957097 obo:MONDO_0001549)
SubClassOf(obo:MONDO_0957097 obo:MONDO_0021181)

# Class: obo:MONDO_0957196 (diffuse midline glioma, H3 K27M-mutant)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:0080684") obo:IAO_0000115 obo:MONDO_0957196 "A histone mutated tumor that is characterized by the presence of histone H3 K27M mutation located throughout the midline structures of the central nervous system.")
AnnotationAssertion(Annotation(oboInOwl:source "MONDO:equivalentTo") oboInOwl:hasDbXref obo:MONDO_0957196 "DOID:0080684")
AnnotationAssertion(oboInOwl:id obo:MONDO_0957196 "MONDO:0957196")
AnnotationAssertion(Annotation(oboInOwl:source "MONDO:GARD") oboInOwl:inSubset obo:MONDO_0957196 mondo:gard_rare)
AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0957196 mondo:rare)
AnnotationAssertion(rdfs:label obo:MONDO_0957196 "diffuse midline glioma, H3 K27M-mutant")
AnnotationAssertion(skos:exactMatch obo:MONDO_0957196 obo:DOID_0080684)
SubClassOf(Annotation(oboInOwl:source "https://orcid.org/0000-0002-4142-7153") obo:MONDO_0957196 <http://www.ebi.ac.uk/efo/EFO_1000026>)

# Class: obo:MONDO_0957204 (autoinflammation with pulmonary and cutaneous vasculitis)

AnnotationAssertion(Annotation(oboInOwl:source "MONDO:MEDGEN") Annotation(oboInOwl:source "MONDO:equivalentTo") oboInOwl:hasDbXref obo:MONDO_0957204 "MEDGEN:1841007")
Expand Down
5 changes: 4 additions & 1 deletion src/ontology/imports/mondo_terms.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,7 @@ http://purl.obolibrary.org/obo/MONDO_0000309
http://purl.obolibrary.org/obo/MONDO_0000327
http://purl.obolibrary.org/obo/MONDO_0000337
http://purl.obolibrary.org/obo/MONDO_0000355
http://purl.obolibrary.org/obo/MONDO_0000358
http://purl.obolibrary.org/obo/MONDO_0000367
http://purl.obolibrary.org/obo/MONDO_0000402
http://purl.obolibrary.org/obo/MONDO_0000440
Expand Down Expand Up @@ -10327,6 +10328,7 @@ http://purl.obolibrary.org/obo/MONDO_0041182
http://purl.obolibrary.org/obo/MONDO_0042370
http://purl.obolibrary.org/obo/MONDO_0042487
http://purl.obolibrary.org/obo/MONDO_0042490
http://purl.obolibrary.org/obo/MONDO_0042976BFO:0000050
http://purl.obolibrary.org/obo/MONDO_0042979
http://purl.obolibrary.org/obo/MONDO_0043005
http://purl.obolibrary.org/obo/MONDO_0043008
Expand Down Expand Up @@ -10763,6 +10765,7 @@ http://purl.obolibrary.org/obo/MONDO_0800447
http://purl.obolibrary.org/obo/MONDO_0800448
http://purl.obolibrary.org/obo/MONDO_0800449
http://purl.obolibrary.org/obo/MONDO_0800451
http://purl.obolibrary.org/obo/MONDO_0800453
http://purl.obolibrary.org/obo/MONDO_0800456
http://purl.obolibrary.org/obo/MONDO_0810000
http://purl.obolibrary.org/obo/MONDO_0850349
Expand Down Expand Up @@ -10936,7 +10939,7 @@ http://purl.obolibrary.org/obo/MONDO_0859576
http://purl.obolibrary.org/obo/MONDO_0859578
http://purl.obolibrary.org/obo/MONDO_0956989
http://purl.obolibrary.org/obo/MONDO_0957048
http://purl.obolibrary.org/obo/MONDO_0957196BFO:0000050
http://purl.obolibrary.org/obo/MONDO_0957196
http://purl.obolibrary.org/obo/MONDO_0957204
http://purl.obolibrary.org/obo/MONDO_0957208
http://purl.obolibrary.org/obo/MONDO_0957211
Expand Down
5 changes: 4 additions & 1 deletion src/ontology/iri_dependencies/mondo_terms.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -11078,4 +11078,7 @@ http://purl.obolibrary.org/obo/MONDO_0700248
http://purl.obolibrary.org/obo/MONDO_0100465
http://purl.obolibrary.org/obo/MONDO_0957273
http://purl.obolibrary.org/obo/MONDO_0021016
http://purl.obolibrary.org/obo/MONDO_0957196
http://purl.obolibrary.org/obo/MONDO_0957196
http://purl.obolibrary.org/obo/MONDO_0800453
http://purl.obolibrary.org/obo/MONDO_0000358
http://purl.obolibrary.org/obo/MONDO_0042976
229 changes: 115 additions & 114 deletions src/ontology/reports/basic-report.tsv
View file

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion src/ontology/reports/class-count-by-prefix.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
"CHEBI" 1774
"OBI" 72
"IDO" 1
"MONDO" 12171
"MONDO" 12172
"FBdv" 1
"FBbt" 110
"IAO" 6
Expand Down
Loading

0 comments on commit d840cff

Please sign in to comment.