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Added STRT-seq terms for #2251 #2300

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Oct 14, 2024
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Added STRT-seq terms for #2251 #2300

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19 changes: 19 additions & 0 deletions src/ontology/efo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -17228,6 +17228,8 @@ Declaration(Class(efo:EFO_0022841))
Declaration(Class(efo:EFO_0022842))
Declaration(Class(efo:EFO_0022843))
Declaration(Class(efo:EFO_0022844))
Declaration(Class(efo:EFO_0022845))
Declaration(Class(efo:EFO_0022846))
Declaration(Class(efo:EFO_0030000))
Declaration(Class(efo:EFO_0030001))
Declaration(Class(efo:EFO_0030002))
Expand Down Expand Up @@ -207598,6 +207600,23 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022844 "stool transplantat
AnnotationAssertion(rdfs:label efo:EFO_0022844 "fecal microbiota transplantation"@en)
SubClassOf(efo:EFO_0022844 efo:EFO_0002571)

# Class: efo:EFO_0022845 (modified STRT-seq)

AnnotationAssertion(dc:creator efo:EFO_0022845 "Zoe May Pendlington")
AnnotationAssertion(dc:date efo:EFO_0022845 "2024-10-14T10:41:11Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022845 "3' STRT-seq")
AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022845 "A modified version of STRT-seq developed by Fuchou Tang's lab as described in PMID: 28457750, which enriched the 3' end of transcripts and used UMI (unique molecular identifier) for quantification.")
AnnotationAssertion(rdfs:label efo:EFO_0022845 "modified STRT-seq"@en)
SubClassOf(efo:EFO_0022845 efo:EFO_0008953)

# Class: efo:EFO_0022846 (5' STRT-seq)

AnnotationAssertion(obo:IAO_0000115 efo:EFO_0022846 "A plate based platform that targets the 5' end of transcripts using a barcoded template switching oligonucleotide.")
AnnotationAssertion(dc:creator efo:EFO_0022846 "Zoe May Pendlington")
AnnotationAssertion(dc:date efo:EFO_0022846 "2024-10-14T10:43:10Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0022846 "5' STRT-seq"@en)
SubClassOf(efo:EFO_0022846 efo:EFO_0008953)

# Class: efo:EFO_0030000 (STARmap)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29930089") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0002-3090-9894") obo:IAO_0000115 efo:EFO_0030000 "STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.")
Expand Down