fix update release workflow #37
Workflow file for this run
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| name: Release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - v[0-9]+.[0-9]+.[0-9]+* | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| prep: | |
| name: Prepare release | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'push' && github.ref_name != 'main' }} | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Free Disk Space (Ubuntu) | |
| if: runner.os == 'Linux' | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: false | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| docker-images: true | |
| swap-storage: true | |
| - name: Checkout release branch | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set environment variables | |
| run: | | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| echo "PYWS_FORTRAN=false" >> $GITHUB_ENV | |
| cat .mf6_ci_ref_remote >> $GITHUB_ENV | |
| - name: Setup gfortran | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 11 | |
| - name: Install Dependencies via Micromamba | |
| uses: mamba-org/[email protected] | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-file: environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=3.10 | |
| conda | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| ref: develop | |
| path: modflow6 | |
| - name: Update flopy MODFLOW 6 classes | |
| working-directory: modflow6/autotest | |
| run: | | |
| python update_flopy.py | |
| - name: Install mf6 nightly build binaries | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Install pywatershed | |
| run: | | |
| pip install . | |
| - name: Version info | |
| run: | | |
| pip -V | |
| pip list | |
| - name: Get GIS files for tests | |
| run: | | |
| python pywatershed/utils/gis_files.py | |
| - name: domainless - run tests not requiring domain data | |
| working-directory: autotest | |
| run: pytest | |
| -m domainless | |
| -n=auto | |
| -vv | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_domainless.xml | |
| - name: sagehen_5yr_no_cascades - generate and manage test data domain, run PRMS and convert csv output to NetCDF | |
| working-directory: autotest | |
| run: | | |
| python generate_test_data.py \ | |
| -n=auto --domain=sagehen_5yr --control_pattern=sagehen_no_cascades.control \ | |
| --remove_prms_csvs --remove_prms_output_dirs | |
| - name: sagehen_5yr_no_cascades - list netcdf input files | |
| working-directory: test_data | |
| run: | | |
| find sagehen_5yr/output_no_cascades -name '*.nc' | |
| - name: sagehen_5yr_no_cascades - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| -vv | |
| -rs | |
| -n=auto | |
| -m "not domainless" | |
| --domain=sagehen_5yr | |
| --control_pattern=sagehen_no_cascades.control | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_sagehen_5yr_no_cascades.xml | |
| - name: hru_1_nhm - generate and manage test data domain, run PRMS and convert csv output to NetCDF | |
| working-directory: autotest | |
| run: | | |
| python generate_test_data.py \ | |
| -n=auto --domain=hru_1 --control_pattern=nhm.control \ | |
| --remove_prms_csvs --remove_prms_output_dirs | |
| - name: hru_1_nhm - list netcdf input files | |
| working-directory: test_data | |
| run: | | |
| find hru_1/output -name '*.nc' | |
| - name: hru_1_nhm - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| -vv | |
| -rs | |
| -n=auto | |
| -m "not domainless" | |
| --domain=hru_1 | |
| --control_pattern=nhm.control | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_hru_1_nhm.xml | |
| - name: drb_2yr with and without dprst and obsin - generate and manage test data | |
| working-directory: autotest | |
| run: | | |
| python generate_test_data.py \ | |
| -n=auto --domain=drb_2yr \ | |
| --remove_prms_csvs --remove_prms_output_dirs | |
| - name: drb_2yr_nhm - list netcdf input files | |
| working-directory: test_data | |
| run: | | |
| find drb_2yr/output -name '*.nc' | |
| - name: drb_2yr_no_dprst - list netcdf input files | |
| working-directory: test_data | |
| run: | | |
| find drb_2yr/output_no_dprst -name '*.nc' | |
| - name: drb_2yr_nhm - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| -vv | |
| -rs | |
| -n=auto | |
| -m "not domainless" | |
| --domain=drb_2yr | |
| --control_pattern=nhm.control | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_drb_2yr_nhm.xml | |
| # Specific tests not redundant with dprst | |
| - name: drb_2yr_no_dprst - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| test_prms_runoff.py | |
| test_prms_soilzone.py | |
| test_prms_groundwater.py | |
| test_prms_above_snow.py | |
| test_prms_below_snow.py | |
| -vv | |
| -rs | |
| -n=auto | |
| -m "not domainless" | |
| --domain=drb_2yr | |
| --control_pattern=no_dprst | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_drb_2yr_no_dprst.xml | |
| # Specific tests not redundant with dprst | |
| - name: drb_2yr_obsin - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| test_obsin_flow_node.py | |
| -vv | |
| -n=0 | |
| -m "not domainless" | |
| --domain=drb_2yr | |
| --control_pattern=nhm_obsin.control | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_drb_2yr_no_dprst.xml | |
| - name: ucb_2yr_nhm - generate and manage test data | |
| working-directory: autotest | |
| run: | | |
| python generate_test_data.py \ | |
| -n=auto --domain=ucb_2yr --control_pattern=nhm.control \ | |
| --remove_prms_csvs --remove_prms_output_dirs | |
| - name: ucb_2yr_nhm - list netcdf input files | |
| working-directory: test_data | |
| run: | | |
| find ucb_2yr/output -name '*.nc' | |
| - name: ucb_2yr_nhm - pywatershed tests | |
| working-directory: autotest | |
| run: pytest | |
| -vv | |
| -n=auto | |
| -m "not domainless" | |
| --domain=ucb_2yr | |
| --control_pattern=nhm.control | |
| --durations=0 | |
| --cov=pywatershed | |
| --cov-report=xml | |
| --junitxml=pytest_ucb_2yr_nhm.xml | |
| - name: Update version | |
| id: version | |
| run: | | |
| ref="${{ github.ref_name }}" | |
| version="${ref#"v"}" | |
| python .github/scripts/update_version.py -v "$version" | |
| python -c "import pywatershed; print('Version: ', pywatershed.__version__)" | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| - name: Format files | |
| run: | | |
| ruff check . | |
| ruff format . | |
| - name: Update release branch, draft PR to main | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: | | |
| ver="${{ steps.version.outputs.version }}" | |
| # commit and push changes | |
| git config core.sharedRepository true | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git add pywatershed | |
| git add version.txt | |
| git commit -m "ci(release): set version to ${{ steps.version.outputs.version }}" | |
| git push origin "${{ github.ref_name }}" | |
| title="Release $ver" | |
| body=' | |
| # Release '$ver' | |
| The release can be approved by merging this pull request into `main`. This will trigger jobs to publish the release to PyPI and reset `develop` from `main`. | |
| ' | |
| gh pr create -B "main" -H "${{ github.ref_name }}" --title "$title" --draft --body "$body" | |
| release: | |
| name: Draft release | |
| # runs only when changes are merged to main | |
| if: ${{ github.event_name == 'push' && github.ref_name == 'main' }} | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: main | |
| - name: Draft release | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: | | |
| version=$(cat version.txt | xargs) | |
| title="pywatershed $version" | |
| gh release create "$version" \ | |
| --target main \ | |
| --title "$title" \ | |
| --draft \ | |
| --latest | |
| publish: | |
| name: Publish package | |
| # runs only when GitHub release is published (manually promoted from draft) | |
| if: ${{ github.event_name == 'release' }} | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| id-token: write # mandatory for trusted publishing | |
| environment: # requires a 'pypi' environment in repo settings | |
| name: pypi | |
| url: https://pypi.org/p/pywatershed | |
| steps: | |
| - name: Checkout main branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: main | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.10 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install build twine | |
| pip install . | |
| - name: Build package | |
| run: python -m build | |
| - name: Check package | |
| run: twine check --strict dist/* | |
| - name: Upload package artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: dist | |
| path: dist | |
| - name: Publish package to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| verbose: true |