Merge pull request #320 from EC-USGS/v2.0.0 #1175
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name: CI | |
on: | |
push: | |
branches: | |
- "*" | |
- "!v[0-9]+.[0-9]+.[0-9]+*" | |
pull_request: | |
branches: | |
- "*" | |
- "!v[0-9]+.[0-9]+.[0-9]+*" | |
workflow_dispatch: | |
inputs: | |
debug_enabled: | |
type: boolean | |
description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
required: false | |
default: false | |
jobs: | |
pyws_setup: | |
name: standard installation | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Upgrade pip and install build and twine | |
run: | | |
python -m pip install --upgrade pip | |
pip install wheel build 'twine<5.0.0' 'importlib_metadata<=7.0.1' 'setuptools<=72.2.0' 'numpy<2.0' | |
- name: Base installation | |
run: | | |
pip --verbose install . | |
- name: Print pyhmn version | |
run: | | |
python -c "import pywatershed; print(pywatershed.__version__)" | |
- name: Build pywatershed, check dist outputs | |
run: | | |
python -m build | |
twine check --strict dist/* | |
pyws_lint: | |
name: linting | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
pip install wheel | |
pip install . | |
pip install ".[lint]" | |
- name: Version info | |
run: | | |
pip -V | |
pip list | |
- name: Lint | |
run: ruff check . | |
- name: Format | |
run: ruff format --check . | |
test: | |
name: ${{ matrix.os }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ "ubuntu-latest", "macos-latest", "windows-latest" ] | |
python-version: ["3.10", "3.11"] | |
steps: | |
- name: Free Disk Space (Ubuntu) | |
if: runner.os == 'Linux' | |
uses: jlumbroso/free-disk-space@main | |
with: | |
tool-cache: false | |
android: true | |
dotnet: true | |
haskell: true | |
large-packages: true | |
docker-images: true | |
swap-storage: true | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Setup tmate session | |
uses: mxschmitt/action-tmate@v3 | |
if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
- name: Set environment variables | |
run: | | |
echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
echo "PYWS_FORTRAN=false" >> $GITHUB_ENV | |
cat .mf6_ci_ref_remote >> $GITHUB_ENV | |
- name: Enforce MF6 ref and remote merge to main | |
if: github.base_ref == 'main' | |
run: | | |
echo Merge commit: GITHUB_BASE_REF = $GITHUB_BASE_REF | |
req_ref=develop # if not develop, submit an issue | |
echo $MF6_REF | |
if [[ "$MF6_REF" != "$req_ref" ]]; then exit 1; fi | |
req_remote=MODFLOW-USGS/modflow6 | |
echo $MF6_REMOTE | |
if [[ "$MF6_REMOTE" != "$req_remote" ]]; then echo "bad mf6 remote in .mf6_ci_ref_remote"; exit 1; fi | |
- name: Setup gfortran | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: gcc | |
version: 11 | |
- name: Link gfortran dylibs on Mac | |
if: runner.os == 'macOS' | |
run: .github/scripts/symlink_gfortran_mac.sh | |
- name: Install Dependencies via Micromamba | |
uses: mamba-org/[email protected] | |
with: | |
micromamba-version: '1.5.10-0' | |
log-level: debug | |
environment-file: environment.yml | |
cache-environment: true | |
cache-downloads: true | |
create-args: >- | |
python=${{matrix.python-version}} | |
- name: Checkout MODFLOW 6 | |
uses: actions/checkout@v4 | |
with: | |
repository: ${{ env.MF6_REMOTE }} | |
ref: ${{ env.MF6_REF }} | |
path: modflow6 | |
- name: Update flopy MODFLOW 6 classes | |
working-directory: modflow6/autotest | |
run: | | |
python update_flopy.py | |
- name: Install mf6 nightly build binaries | |
uses: modflowpy/install-modflow-action@v1 | |
with: | |
repo: modflow6-nightly-build | |
- name: Install pywatershed | |
run: | | |
pip install . | |
- name: Version info | |
run: | | |
pip -V | |
pip list | |
- name: Get GIS files for tests | |
run: | | |
python pywatershed/utils/gis_files.py | |
- name: domainless - run tests not requiring domain data | |
working-directory: autotest | |
run: pytest | |
-m domainless | |
-n=auto | |
-vv | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_domainless.xml | |
- name: sagehen_5yr_no_cascades - generate and manage test data domain, run PRMS and convert csv output to NetCDF | |
working-directory: autotest | |
run: | | |
python generate_test_data.py \ | |
-n=auto --domain=sagehen_5yr --control_pattern=sagehen_no_cascades.control \ | |
--remove_prms_csvs --remove_prms_output_dirs | |
- name: sagehen_5yr_no_cascades - list netcdf input files | |
working-directory: test_data | |
run: | | |
find sagehen_5yr/output_no_cascades -name '*.nc' | |
- name: sagehen_5yr_no_cascades - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
-vv | |
-rs | |
-n=auto | |
-m "not domainless" | |
--domain=sagehen_5yr | |
--control_pattern=sagehen_no_cascades.control | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_sagehen_5yr_no_cascades.xml | |
- name: hru_1_nhm - generate and manage test data domain, run PRMS and convert csv output to NetCDF | |
working-directory: autotest | |
run: | | |
python generate_test_data.py \ | |
-n=auto --domain=hru_1 --control_pattern=nhm.control \ | |
--remove_prms_csvs --remove_prms_output_dirs | |
- name: hru_1_nhm - list netcdf input files | |
working-directory: test_data | |
run: | | |
find hru_1/output -name '*.nc' | |
- name: hru_1_nhm - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
-vv | |
-rs | |
-n=auto | |
-m "not domainless" | |
--domain=hru_1 | |
--control_pattern=nhm.control | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_hru_1_nhm.xml | |
- name: drb_2yr with and without dprst and obsin - generate and manage test data | |
working-directory: autotest | |
run: | | |
python generate_test_data.py \ | |
-n=auto --domain=drb_2yr \ | |
--remove_prms_csvs --remove_prms_output_dirs | |
- name: drb_2yr_nhm - list netcdf input files | |
working-directory: test_data | |
run: | | |
find drb_2yr/output -name '*.nc' | |
- name: drb_2yr_no_dprst - list netcdf input files | |
working-directory: test_data | |
run: | | |
find drb_2yr/output_no_dprst -name '*.nc' | |
- name: drb_2yr_nhm - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
-vv | |
-rs | |
-n=auto | |
-m "not domainless" | |
--domain=drb_2yr | |
--control_pattern=nhm.control | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_drb_2yr_nhm.xml | |
# Specific tests not redundant with dprst | |
- name: drb_2yr_no_dprst - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
test_prms_runoff.py | |
test_prms_soilzone.py | |
test_prms_groundwater.py | |
test_prms_above_snow.py | |
test_prms_below_snow.py | |
-vv | |
-rs | |
-n=auto | |
-m "not domainless" | |
--domain=drb_2yr | |
--control_pattern=no_dprst | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_drb_2yr_no_dprst.xml | |
# Specific tests not redundant with dprst | |
- name: drb_2yr_obsin - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
test_obsin_flow_node.py | |
-vv | |
-n=0 | |
-m "not domainless" | |
--domain=drb_2yr | |
--control_pattern=nhm_obsin.control | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_drb_2yr_no_dprst.xml | |
- name: ucb_2yr_nhm - generate and manage test data | |
working-directory: autotest | |
run: | | |
python generate_test_data.py \ | |
-n=auto --domain=ucb_2yr --control_pattern=nhm.control \ | |
--remove_prms_csvs --remove_prms_output_dirs | |
- name: ucb_2yr_nhm - list netcdf input files | |
working-directory: test_data | |
run: | | |
find ucb_2yr/output -name '*.nc' | |
- name: ucb_2yr_nhm - pywatershed tests | |
working-directory: autotest | |
run: pytest | |
-vv | |
-n=auto | |
-m "not domainless" | |
--domain=ucb_2yr | |
--control_pattern=nhm.control | |
--durations=0 | |
--cov=pywatershed | |
--cov-report=xml | |
--junitxml=pytest_ucb_2yr_nhm.xml | |
- name: Upload test results | |
if: always() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Test results for ${{ runner.os }}-${{ matrix.python-version }} | |
path: | | |
./autotest/pytest_hru_1_nhm.xml | |
./autotest/pytest_drb_2yr_nhm.xml | |
./autotest/pytest_drb_2yr_no_dprst.xml | |
./autotest/pytest_ucb_2yr_nhm.xml | |
- name: Upload code coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
file: ./autotest/coverage.xml # should be just the ucb result | |
# flags: unittests | |
env_vars: RUNNER_OS,PYTHON_VERSION | |
# name: codecov-umbrella | |
fail_ci_if_error: false | |
version: "v0.1.15" |