PeakQC is a software a tool for automated quality control (QC) of mass spectrometry (MS) data which is is omics-agnostic (works for any ion type, e.g.: metabolomics, lipidomics, proteomics, etc.), supports various instrument platforms and acquisition modes and has a simple graphical user interface.
- Download the latest version (Release section, right panel) and uncompress it
- Double click IonToolPack.exe
- Import raw MS files and click “Process”
- See more details and examples in PeakQC_User-guide_*.pdf
Supported formats include Agilent, Thermo, and mzML, and for different types of MS acquisition methods:
- LC-MS
- LC-IMS-MS
- With/without fragmentation spectra in DDA or DIA mode
- Direct infusion
If you this tool or any portions of this code please cite:
- Harrison et al. "PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data". Under review.
- Bilbao et al. "MZA: A Data Conversion Tool to Facilitate Software Development and Artificial Intelligence Research in Multidimensional Mass Spectrometry". Journal of Proteome Research 2023 https://doi.org/10.1021/acs.jproteome.2c00313.